Assay Details
Target Gene Details
Entrez Gene ID: | 50515 |
Gene Name: | carbohydrate (chondroitin 4) sulfotransferase 11 |
Gene Aliases: |
C4ST, C4ST-1, C4ST1, HSA269537 |
Location: |
Chr.12:104456914-104762014 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
CHST11 | NM_001173982.1 | NP_001167453.1 | ||
NM_018413.5 | NP_060883.1 | |||
AB042326.1 | BAA95485.1 | |||
AF239820.1 | AAF81691.1 | |||
AJ269537.2 | CAB87380.1 | |||
AJ289134.1 | CAB92134.1 | |||
AK290923.1 | ||||
AK313217.1 | ||||
BC013315.1 | AAH13315.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv832504 | Chr.12:104459553 - 104634467 on Build GRCh38 | Gain+Loss | MIR3922 CHST11 |
nsv1042647 | Chr.12:104467716 - 104494716 on Build GRCh38 | Loss | CHST11 |
nsv1160060 | Chr.12:104460233 - 104482789 on Build GRCh38 | Duplication | CHST11 |
nsv832502 | Chr.12:104439951 - 104514510 on Build GRCh38 | Loss | CHST11 |
nsv868 | Chr.12:104465186 - 104501794 on Build GRCh38 | Deletion | CHST11 |
More Information
Additional Information:
For this assay, SNP(s) [rs78233670] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |