Hs04033601_cn

• Gene Symbol: DDX39A
• Assay Reference Genome Location: Chr.19:14416472 on build GRCh38
• Cytoband: 19p13.12

Target Gene Details

• Entrez Gene ID: 10212
• Gene Name: DEAD-box helicase 39A
• Gene Aliases: BAT1, BAT1L, DDX39, DDXL, URH49
• Location: Chr.19:14408798-14419383 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
DDX39A	NM_005804.3			NP_005795.2
	NR_046366.2
	XM_006722606.3			XP_006722669.1
	XM_011527620.1			XP_011525922.1
	AK293911.1
	AK301847.1
	BC001009.2			AAH01009.1
	BC032128.2			AAH32128.1
	DA432925.1
	DB032777.1
	U90426.1			AAB50231.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1160590	Chr.19:14398750 - 14462842 on Build GRCh38	Deletion	PKN1 DDX39A ADGRE5
nsv833764	Chr.19:14381787 - 14504061 on Build GRCh38	Loss	PKN1 DDX39A GIPC1 PTGER1 ADGRE5 SNRPGP15

More Information

Additional Information:

For this assay, SNP(s) [rs147752807] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

mRNA splicing, via spliceosome
termination of RNA polymerase II transcription
RNA export from nucleus
mRNA export from nucleus
cellular response to DNA damage stimulus
regulation of gene expression
RNA secondary structure unwinding
mRNA 3'-end processing

Function(s)

ATP-dependent RNA helicase activity
protein binding
ATP binding
ATPase activity
poly(A) RNA binding