Assay Details
Target Gene Details
Entrez Gene ID: | 54715 |
Gene Name: | RNA binding protein, fox-1 homolog 1 |
Gene Aliases: |
2BP1, A2BP1, FOX-1, FOX1, HRNBP1 |
Location: |
Chr.16:5239749-7713343 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
RBFOX1 | XM_017023319.1 | XP_016878808.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1035156 | Chr.16:5091032 - 5996934 on Build GRCh38 | Gain | RBFOX1 MIR8065 EEF2KMT LINC01570 |
nsv1046986 | Chr.16:4049000 - 5555721 on Build GRCh38 | Gain | NAGPA-AS1 C16orf71 UBN1 LOC105371063 PAM16 SEC14L5 SEPT12 C16orf89 SRL GLIS2 C16orf96 NAGPA CDIP1 ANKS3 TFAP4 NUDT16L1 ALG1 MIR6769A ROGDI RBFOX1 DNAJA3 VASN NMRAL1 CORO7 GLYR1 LINC01569 EEF2KMT UBALD1 CORO7-PAM16 HMOX2 MGRN1 ZNF500 PPL GLIS2-AS1 SMIM22 ADCY9 |
nsv1045304 | Chr.16:5205761 - 5326875 on Build GRCh38 | Loss | RBFOX1 |
dgv2698n100 | Chr.16:5304641 - 5327717 on Build GRCh38 | Loss | RBFOX1 |
nsv1036241 | Chr.16:5271882 - 5387609 on Build GRCh38 | Loss | RBFOX1 |
esv34300 | Chr.16:5005938 - 5322534 on Build GRCh38 | Gain | RBFOX1 NAGPA-AS1 NAGPA SEC14L5 EEF2KMT C16orf89 ALG1 |
esv2760069 | Chr.16:4922849 - 5374828 on Build GRCh38 | Gain+Loss | RBFOX1 NAGPA-AS1 PPL NAGPA SEC14L5 EEF2KMT C16orf89 ALG1 |
nsv428318 | Chr.16:5011594 - 5374828 on Build GRCh38 | Gain | RBFOX1 NAGPA-AS1 NAGPA SEC14L5 EEF2KMT C16orf89 ALG1 |
esv2762021 | Chr.16:5293419 - 5377238 on Build GRCh38 | Loss | RBFOX1 |
nsv1037303 | Chr.16:5287645 - 5327595 on Build GRCh38 | Loss | RBFOX1 |
More Information
Additional Information:
For this assay, SNP(s) [rs75744218,rs78251475] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |