Assay Details
Target Gene Details
Entrez Gene ID: | 79834 |
Gene Name: | pseudopodium enriched atypical kinase 1 |
Gene Aliases: |
SGK269 |
Location: |
Chr.15:77100829-77420104 on Build GRCh38 |
Assay Gene Location: | Within Intron 17 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PEAK1 | NM_024776.3 | NP_079052.2 | ||
XM_005254670.2 | XP_005254727.1 | |||
XM_005254671.2 | XP_005254728.1 | |||
XM_005254673.2 | XP_005254730.1 | |||
XM_005254674.2 | XP_005254731.1 | |||
XM_005254675.4 | XP_005254732.1 | |||
XM_011522033.2 | XP_011520335.1 | |||
XM_011522034.2 | XP_011520336.1 | |||
XM_011522035.2 | XP_011520337.1 | |||
XM_011522036.2 | XP_011520338.1 | |||
XM_011522037.2 | XP_011520339.1 | |||
XM_011522038.2 | XP_011520340.1 | |||
XM_011522039.2 | XP_011520341.1 | |||
XM_011522040.1 | XP_011520342.1 | |||
XM_011522042.2 | XP_011520344.1 | |||
AB082533.1 | BAC02711.1 | |||
AK127658.1 | BAC87076.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2749898 | Chr.15:75764003 - 77933523 on Build GRCh38 | Deletion | HMG20A LOC441728 RCN2 UBE2Q2 ISL2 SCAPER LINGO1 LINC00597 LINGO1-AS2 LOC645752 TSPAN3 FBXO22 LOC101929439 MIR3713 PEAK1 NRG4 LINGO1-AS1 PSTPIP1 TYRO3P ETFA TMEM266 FBXO22-AS1 LOC101929457 |
nsv1040852 | Chr.15:76867896 - 77845199 on Build GRCh38 | Gain | HMG20A RCN2 SCAPER PEAK1 LINGO1 LINC00597 LINGO1-AS1 PSTPIP1 LINGO1-AS2 LOC101929457 TSPAN3 |
More Information
Additional Information:
For this assay, SNP(s) [rs79373539] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |