Assay Details
Target Gene Details
Entrez Gene ID: | 10399 |
Gene Name: | receptor for activated C kinase 1 |
Gene Aliases: |
GNB2L1, Gnb2-rs1, H12.3, HLC-7, PIG21 |
Location: |
Chr.5:181236928-181243906 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
RACK1 | NM_006098.4 | NP_006089.1 | ||
AK095666.1 | ||||
AK222488.1 | BAD96208.1 | |||
AK301029.1 | ||||
AK301468.1 | ||||
AK303316.1 | ||||
AK310916.1 | ||||
AY336089.1 | AAR24619.1 | |||
BC000214.1 | AAH00214.1 | |||
BC000366.2 | AAH00366.1 | |||
BC010119.2 | AAH10119.1 | |||
BC014256.1 | AAH14256.1 | |||
BC014788.1 | AAH14788.1 | |||
BC017287.2 | AAH17287.1 | |||
BC019093.2 | AAH19093.1 | |||
BC019362.1 | AAH19362.1 | |||
BC021993.1 | AAH21993.1 | |||
BC032006.1 | AAH32006.1 | |||
CR456978.1 | CAG33259.1 | |||
CR541909.1 | CAG46707.1 | |||
GU727632.1 | ||||
JN104586.1 | ||||
M24194.1 | AAA59626.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1028730 | Chr.5:181236035 - 181292789 on Build GRCh38 | Gain | TRIM52 SNORD96A CTC-338M12.4 RACK1 SNORD95 TRIM52-AS1 |
nsv428133 | Chr.5:180805451 - 181359487 on Build GRCh38 | Gain | ZFP62 TRIM52 LINC00847 OR2V1 TRIM41 MGAT1 SNORD96A TRIM7 SNORD95 LOC102577426 OR2V2 BTNL9 OR4F3 MIR8089 CTC-338M12.4 MIR4638 BTNL8 RACK1 LOC100132062 BTNL3 HEIH TRIM52-AS1 |
nsv462591 | Chr.5:181195615 - 181263936 on Build GRCh38 | Loss | TRIM52 TRIM41 SNORD96A TRIM7 CTC-338M12.4 MIR4638 RACK1 SNORD95 TRIM52-AS1 |
nsv830567 | Chr.5:181103365 - 181255322 on Build GRCh38 | Loss | TRIM52 OR2V1 TRIM41 SNORD96A TRIM7 CTC-338M12.4 MIR4638 RACK1 SNORD95 LOC102577426 OR2V2 |
dgv1156e214 | Chr.5:181241739 - 181283113 on Build GRCh38 | Loss | TRIM52 SNORD96A CTC-338M12.4 RACK1 SNORD95 TRIM52-AS1 |
nsv517697 | Chr.5:181180883 - 181263936 on Build GRCh38 | Loss | TRIM52 TRIM41 SNORD96A TRIM7 CTC-338M12.4 MIR4638 RACK1 SNORD95 LOC102577426 TRIM52-AS1 |
More Information
Additional Information:
For this assay, SNP(s) [rs58171665] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |