Assay Details
Target Gene Details
Entrez Gene ID: | 152992 |
Gene Name: | tRNA methyltransferase 44 homolog (S. cerevisiae) |
Gene Aliases: |
C4orf23, METTL19, TRM44 |
Location: |
Chr.4:8440774-8512531 on Build GRCh38 |
Assay Gene Location: | Within Intron 11 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TRMT44 | NM_152544.2 | NP_689757.2 | ||
XM_005247950.3 | XP_005248007.1 | |||
XM_011513406.2 | XP_011511708.1 | |||
XM_011513407.2 | XP_011511709.1 | |||
XM_011513408.1 | XP_011511710.1 | |||
XM_011513409.2 | XP_011511711.1 | |||
AK093044.1 | BAC04031.1 | |||
BC035655.1 | AAH35655.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1002794 | Chr.4:8108356 - 8489207 on Build GRCh38 | Gain | TRMT44 ACOX3 HTRA3 SH3TC1 ABLIM2 |
nsv1005698 | Chr.4:8434559 - 10248775 on Build GRCh38 | Gain | TRMT44 USP17L22 CPZ DRD5 MIR548I2 USP17L11 USP17L29 USP17L28 USP17L27 DEFB131 GPR78 ACOX3 USP17L19 USP17L15 USP17L17 LOC100133128 USP17L5 OR7E85P USP17L13 USP17L20 USP17L12 LOC650293 MIR3138 USP17L9P USP17L30 SLC2A9 HMX1 FAM86KP USP17L10 LOC101928532 USP17L24 USP17L6P USP17L25 USP17L21 USP17L26 WDR1 OR7E35P USP17L18 |
nsv829854 | Chr.4:8401194 - 8504680 on Build GRCh38 | Gain+Loss | TRMT44 ACOX3 |
More Information
Additional Information:
For this assay, SNP(s) [rs77254399] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |