Assay Details
Target Gene Details
Entrez Gene ID: | 152992 |
Gene Name: | tRNA methyltransferase 44 homolog (S. cerevisiae) |
Gene Aliases: |
C4orf23, METTL19, TRM44 |
Location: |
Chr.4:8440774-8512531 on Build GRCh38 |
Assay Gene Location: | Within Intron 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TRMT44 | NM_152544.2 | NP_689757.2 | ||
XM_005247950.3 | XP_005248007.1 | |||
XM_011513406.2 | XP_011511708.1 | |||
XM_011513407.2 | XP_011511709.1 | |||
XM_011513408.1 | XP_011511710.1 | |||
XM_011513409.2 | XP_011511711.1 | |||
XM_011513410.2 | XP_011511712.1 | |||
XM_017007811.1 | XP_016863300.1 | |||
BC035655.1 | AAH35655.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv461220 | Chr.4:8371217 - 8456667 on Build GRCh38 | Loss | TRMT44 ACOX3 |
nsv1002794 | Chr.4:8108356 - 8489207 on Build GRCh38 | Gain | ABLIM2 SH3TC1 TRMT44 HTRA3 ACOX3 |
nsv1005698 | Chr.4:8434559 - 10248775 on Build GRCh38 | Gain | USP17L6P OR7E85P USP17L21 USP17L9P LOC101928532 USP17L17 LOC100133128 USP17L28 LOC650293 ACOX3 USP17L20 USP17L19 USP17L11 USP17L26 USP17L13 WDR1 DEFB131 USP17L30 TRMT44 GPR78 MIR548I2 FAM86KP SLC2A9 USP17L29 USP17L24 DRD5 USP17L18 USP17L12 OR7E35P HMX1 USP17L10 USP17L27 MIR3138 USP17L22 USP17L15 CPZ USP17L25 USP17L5 |
nsv829854 | Chr.4:8401194 - 8504680 on Build GRCh38 | Gain+Loss | TRMT44 ACOX3 |
More Information
Additional Information:
For this assay, SNP(s) [rs73211371,rs73211373] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |