Assay Details
Target Gene Details
Entrez Gene ID: | 152992 |
Gene Name: | tRNA methyltransferase 44 homolog (S. cerevisiae) |
Gene Aliases: |
C4orf23, METTL19, TRM44 |
Location: |
Chr.4:8440774-8512531 on Build GRCh38 |
Assay Gene Location: | Within Intron 4 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TRMT44 | NM_152544.2 | NP_689757.2 | ||
XM_005247950.3 | XP_005248007.1 | |||
XM_011513406.2 | XP_011511708.1 | |||
XM_011513407.2 | XP_011511709.1 | |||
XM_011513408.1 | XP_011511710.1 | |||
XM_011513409.2 | XP_011511711.1 | |||
XM_011513410.2 | XP_011511712.1 | |||
XM_017007811.1 | XP_016863300.1 | |||
BC035655.1 | AAH35655.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv461220 | Chr.4:8371217 - 8456667 on Build GRCh38 | Loss | TRMT44 ACOX3 |
nsv1002794 | Chr.4:8108356 - 8489207 on Build GRCh38 | Gain | HTRA3 SH3TC1 ABLIM2 TRMT44 ACOX3 |
nsv1005698 | Chr.4:8434559 - 10248775 on Build GRCh38 | Gain | OR7E85P HMX1 USP17L11 USP17L17 USP17L25 ACOX3 FAM86KP CPZ WDR1 LOC101928532 USP17L5 USP17L24 USP17L29 USP17L6P GPR78 USP17L18 USP17L26 LOC100133128 USP17L15 DRD5 USP17L20 USP17L12 TRMT44 USP17L28 USP17L13 LOC650293 USP17L10 DEFB131 OR7E35P USP17L21 MIR3138 MIR548I2 USP17L30 USP17L9P USP17L19 USP17L27 SLC2A9 USP17L22 |
nsv829854 | Chr.4:8401194 - 8504680 on Build GRCh38 | Gain+Loss | TRMT44 ACOX3 |
More Information
Additional Information:
For this assay, SNP(s) [rs114331154] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |