Assay Details
Target Gene Details
Entrez Gene ID: | 152992 |
Gene Name: | tRNA methyltransferase 44 homolog (S. cerevisiae) |
Gene Aliases: |
C4orf23, METTL19, TRM44 |
Location: |
Chr.4:8440774-8512531 on Build GRCh38 |
Assay Gene Location: | Within Intron 4 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TRMT44 | NM_152544.2 | NP_689757.2 | ||
XM_005247950.3 | XP_005248007.1 | |||
XM_011513406.2 | XP_011511708.1 | |||
XM_011513407.2 | XP_011511709.1 | |||
XM_011513408.1 | XP_011511710.1 | |||
XM_011513409.2 | XP_011511711.1 | |||
XM_011513410.2 | XP_011511712.1 | |||
XM_017007811.1 | XP_016863300.1 | |||
BC035655.1 | AAH35655.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv461220 | Chr.4:8371217 - 8456667 on Build GRCh38 | Loss | ACOX3 TRMT44 |
nsv1002794 | Chr.4:8108356 - 8489207 on Build GRCh38 | Gain | ACOX3 HTRA3 ABLIM2 SH3TC1 TRMT44 |
nsv1005698 | Chr.4:8434559 - 10248775 on Build GRCh38 | Gain | LOC101928532 GPR78 USP17L15 USP17L9P USP17L29 USP17L6P HMX1 MIR3138 USP17L26 USP17L5 USP17L11 LOC100133128 USP17L12 OR7E85P MIR548I2 USP17L22 ACOX3 OR7E35P USP17L13 WDR1 DEFB131 LOC650293 USP17L21 USP17L25 USP17L18 SLC2A9 USP17L19 USP17L27 USP17L20 TRMT44 CPZ DRD5 USP17L24 USP17L30 USP17L28 FAM86KP USP17L10 USP17L17 |
nsv829854 | Chr.4:8401194 - 8504680 on Build GRCh38 | Gain+Loss | ACOX3 TRMT44 |
More Information
Additional Information:
For this assay, SNP(s) [rs114331154] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |