Assay Details
Target Gene Details
Entrez Gene ID: | 152992 |
Gene Name: | tRNA methyltransferase 44 homolog (S. cerevisiae) |
Gene Aliases: |
C4orf23, METTL19, TRM44 |
Location: |
Chr.4:8440774-8512531 on Build GRCh38 |
Assay Gene Location: | Within Intron 4 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TRMT44 | NM_152544.2 | NP_689757.2 | ||
XM_005247950.3 | XP_005248007.1 | |||
XM_011513406.2 | XP_011511708.1 | |||
XM_011513407.2 | XP_011511709.1 | |||
XM_011513408.1 | XP_011511710.1 | |||
XM_011513409.2 | XP_011511711.1 | |||
XM_011513410.2 | XP_011511712.1 | |||
XM_017007811.1 | XP_016863300.1 | |||
BC035655.1 | AAH35655.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv461220 | Chr.4:8371217 - 8456667 on Build GRCh38 | Loss | ACOX3 TRMT44 |
nsv1002794 | Chr.4:8108356 - 8489207 on Build GRCh38 | Gain | ABLIM2 SH3TC1 ACOX3 HTRA3 TRMT44 |
nsv1005698 | Chr.4:8434559 - 10248775 on Build GRCh38 | Gain | USP17L5 ACOX3 USP17L19 CPZ USP17L28 WDR1 FAM86KP OR7E35P USP17L22 MIR548I2 DRD5 HMX1 USP17L26 TRMT44 USP17L9P USP17L24 USP17L18 USP17L17 GPR78 USP17L10 USP17L6P USP17L11 SLC2A9 USP17L20 OR7E85P USP17L27 USP17L12 LOC101928532 USP17L29 LOC650293 MIR3138 USP17L30 USP17L13 LOC100133128 USP17L15 DEFB131 USP17L21 USP17L25 |
nsv829854 | Chr.4:8401194 - 8504680 on Build GRCh38 | Gain+Loss | ACOX3 TRMT44 |
More Information
Additional Information:
For this assay, SNP(s) [rs116072436] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |