Assay Details
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
dgv4n111 | Chr.1:869076 - 914637 on Build GRCh38 | Duplication | LOC284600 FAM41C |
nsv1004962 | Chr.1:629241 - 915295 on Build GRCh38 | Gain | LOC284600 LOC100133331 MTND2P28 LOC100288069 OR4F16 LINC00115 LINC01128 LOC100287934 LOC107984841 MTND1P23 MIR6723 FAM87B FAM41C |
nsv482937 | Chr.1:10001 - 2368561 on Build GRCh38 | Loss | SLC35E2B LOC100133331 TMEM88B LOC105378947 MTND2P28 LOC105378948 CALML6 TMEM240 MIB2 ANKRD65 LOC100506504 MIR6859-2 HES4 CPTP VWA1 MMP23A LOC107985729 SAMD11 MIR6726 MTND1P23 CDK11A PRKCZ ISG15 UBE2J2 LOC100288069 MMP23B SKI LOC148413 LOC100130417 MIR6723 NOC2L PERM1 PUSL1 MORN1 FAAP20 DVL1 MXRA8 LOC107985728 LOC102724312 LOC100132287 FNDC10 CPSF3L GNB1 LINC01342 WASH7P KLHL17 LOC284600 OR4F16 LOC102725121 ATAD3C LOC105378949 MIR6727 ACAP3 SDF4 LOC105378589 LOC100287934 MIR200A LOC101928626 LOC729737 ATAD3B TTLL10-AS1 PLEKHN1 CFAP74 FAM132A TNFRSF18 LOC100129534 SSU72 LOC100134822 MIR1302-2 MIR6859-1 ATAD3A C1orf159 OR4F29 B3GALT6 MIR200B SLC35E2 AURKAIP1 DDX11L1 TAS1R3 LOC100288175 LINC00115 LINC01128 CDK11B MIR6808 LOC105378591 GABRD TNFRSF4 FAM87B TMEM52 FAM41C LOC105378592 CCNL2 OR4F5 NADK TTLL10 SCNN1D FAM138A MRPL20 LOC107984841 MIR429 RNF223 AGRN |
nsv950451 | Chr.1:899421 - 1094520 on Build GRCh38 | Deletion | PERM1 KLHL17 LOC284600 PLEKHN1 LOC105378948 HES4 ISG15 LOC100288175 SAMD11 LOC107985728 LOC100130417 C1orf159 RNF223 NOC2L AGRN |
nsv509035 | Chr.1:891406 - 985724 on Build GRCh38 | Insertion | PERM1 KLHL17 LOC284600 PLEKHN1 LOC107985728 LOC100130417 NOC2L SAMD11 |
dgv1n67 | Chr.1:811028 - 914557 on Build GRCh38 | Gain | LOC284600 FAM87B LINC00115 FAM41C LINC01128 |
nsv1005935 | Chr.1:805477 - 915295 on Build GRCh38 | Gain | LOC284600 FAM87B LINC00115 FAM41C LINC01128 |
esv3584982 | Chr.1:837710 - 917284 on Build GRCh38 | Gain | LOC284600 LOC100130417 FAM41C LINC01128 |
nsv1009537 | Chr.1:841742 - 915295 on Build GRCh38 | Gain | LOC284600 FAM41C LINC01128 |
nsv428334 | Chr.1:874371 - 1220569 on Build GRCh38 | Gain | KLHL17 LOC284600 LOC105378948 ISG15 LOC100288175 SDF4 MIR200A TNFRSF4 LOC100130417 FAM41C NOC2L PERM1 TTLL10-AS1 PLEKHN1 HES4 TTLL10 TNFRSF18 SAMD11 LOC107985728 C1orf159 MIR429 RNF223 LINC01342 MIR200B AGRN |
nsv10161 | Chr.1:776731 - 1777210 on Build GRCh38 | Gain+Loss | SLC35E2B KLHL17 LOC284600 TMEM88B LOC105378948 ATAD3C TMEM240 MIR6727 ACAP3 SDF4 LOC100287934 MIR200A MIB2 ANKRD65 ATAD3B TTLL10-AS1 PLEKHN1 HES4 CPTP VWA1 MMP23A LOC107985729 FAM132A TNFRSF18 SAMD11 MIR6726 SSU72 ATAD3A C1orf159 CDK11A B3GALT6 MIR200B SLC35E2 AURKAIP1 TAS1R3 ISG15 LOC100288175 UBE2J2 LOC100288069 LINC00115 MMP23B LINC01128 CDK11B MIR6808 LOC148413 TNFRSF4 LOC100130417 FAM87B FAM41C NOC2L PERM1 CCNL2 PUSL1 NADK TTLL10 SCNN1D DVL1 MXRA8 MRPL20 LOC107985728 LOC102724312 FNDC10 CPSF3L MIR429 RNF223 LINC01342 AGRN |
dgv5n100 | Chr.1:585989 - 1114424 on Build GRCh38 | Gain | KLHL17 LOC284600 LOC100133331 LOC105378947 MTND2P28 LOC105378948 ISG15 LOC100288175 LOC100288069 OR4F16 LINC00115 LINC01128 LOC100287934 LOC100130417 MIR6723 FAM87B LOC101928626 FAM41C NOC2L PERM1 PLEKHN1 HES4 SAMD11 LOC107984841 LOC107985728 MTND1P23 C1orf159 RNF223 AGRN |
nsv517709 | Chr.1:817186 - 1275912 on Build GRCh38 | Gain+Loss | KLHL17 LOC284600 LOC105378948 ISG15 LOC100288175 UBE2J2 LINC00115 LINC01128 SDF4 MIR200A TNFRSF4 LOC100130417 FAM87B FAM41C NOC2L PERM1 TTLL10-AS1 PLEKHN1 HES4 TTLL10 FAM132A TNFRSF18 SAMD11 LOC107985728 C1orf159 MIR429 RNF223 LINC01342 B3GALT6 MIR200B AGRN |
dgv1n111 | Chr.1:690090 - 939522 on Build GRCh38 | Duplication | LOC284600 LOC100133331 LOC100288069 OR4F16 LINC00115 LINC01128 SAMD11 LOC100287934 LOC107984841 LOC107985728 LOC100130417 FAM87B FAM41C |
dgv3n111 | Chr.1:783283 - 939522 on Build GRCh38 | Duplication | LOC284600 LOC100287934 LOC107985728 LOC100130417 FAM87B LINC00115 FAM41C LINC01128 SAMD11 |
dgv2n67 | Chr.1:877618 - 1426500 on Build GRCh38 | Gain | KLHL17 LOC284600 TMEM88B AURKAIP1 LOC105378948 TAS1R3 ISG15 LOC100288175 UBE2J2 MIR6808 MIR6727 ACAP3 SDF4 MIR200A LOC148413 TNFRSF4 LOC100130417 ANKRD65 NOC2L PERM1 CCNL2 TTLL10-AS1 PUSL1 PLEKHN1 HES4 CPTP TTLL10 SCNN1D DVL1 FAM132A TNFRSF18 SAMD11 MXRA8 MIR6726 MRPL20 LOC107985728 C1orf159 CPSF3L MIR429 RNF223 LINC01342 B3GALT6 MIR200B AGRN |
nsv832980 | Chr.1:848279 - 1007037 on Build GRCh38 | Gain | PERM1 KLHL17 LOC284600 PLEKHN1 LOC107985728 HES4 LOC100130417 FAM41C LINC01128 NOC2L SAMD11 |
esv3584976 | Chr.1:733250 - 914824 on Build GRCh38 | Gain | LOC284600 LOC100287934 LOC107984841 LOC100288069 FAM87B LINC00115 FAM41C LINC01128 |
More Information
Additional Information:
For this assay, SNP(s) [rs115809836] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intergenic/Unknown DGV Variation |