Assay Details
Target Gene Details
Entrez Gene ID: | 1953 |
Gene Name: | multiple EGF like domains 6 |
Gene Aliases: |
EGFL3 |
Location: |
Chr.1:3487942-3624757 on Build GRCh38 |
Assay Gene Location: | Within Intron 36 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
MEGF6 | NM_001409.3 | NP_001400.3 | ||
XM_006710406.3 | XP_006710469.1 | |||
XM_011540885.1 | XP_011539187.1 | |||
XM_011540886.1 | XP_011539188.1 | |||
XM_011540887.2 | XP_011539189.1 | |||
XM_017000533.1 | XP_016856022.1 | |||
AB011539.2 | BAA32467.2 | |||
AB231860.1 | ||||
BU501408.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2758915 | Chr.1:3372374 - 3632289 on Build GRCh38 | Gain | MEGF6 MIR551A TPRG1L ARHGEF16 PRDM16 WRAP73 |
nsv470687 | Chr.1:3356499 - 3763210 on Build GRCh38 | Loss | MEGF6 MIR551A CCDC27 TPRG1L ARHGEF16 PRDM16 TP73-AS1 TP73 WRAP73 |
nsv1012423 | Chr.1:3477686 - 4747449 on Build GRCh38 | Gain | MIR551A CCDC27 DFFB C1orf174 ARHGEF16 LINC01134 AJAP1 WRAP73 CEP104 MEGF6 LOC284661 TPRG1L LRRC47 TP73-AS1 TP73 LINC01346 SMIM1 |
nsv951959 | Chr.1:3051037 - 3812036 on Build GRCh38 | Deletion | MIR551A CCDC27 ARHGEF16 PRDM16 WRAP73 LOC105378604 MIR4251 MEGF6 TPRG1L LINC00982 LRRC47 TP73-AS1 TP73 SMIM1 |
nsv545125 | Chr.1:3490443 - 3540731 on Build GRCh38 | Loss | MEGF6 |
esv3893545 | Chr.1:3460878 - 3512044 on Build GRCh38 | Loss | MEGF6 ARHGEF16 |
nsv830203 | Chr.1:3446374 - 3607752 on Build GRCh38 | Loss | MEGF6 MIR551A ARHGEF16 |
nsv299 | Chr.1:3476928 - 3512705 on Build GRCh38 | Insertion | MEGF6 ARHGEF16 |
More Information
Additional Information:
For this assay, SNP(s) [rs76271892] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |