Assay Details
Target Gene Details
Entrez Gene ID: | 83903 |
Gene Name: | germ cell associated 2, haspin |
Gene Aliases: |
HASPIN |
Location: |
Chr.17:3723903-3726699 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GSG2 | NM_031965.2 | 1 | 2371 | NP_114171.2 |
AB039834.3 | 1 | 2368 | ||
AF289865.1 | 1 | 2367 | AAK30300.1 | |
AK056691.1 | 2 | 1257 | BAB71255.1 | |
AK292715.1 | 1 | 2357 | ||
AK310546.1 | ||||
AK315247.1 | 1 | 2371 | ||
BC016626.1 | ||||
BC047457.1 | 1 | 2352 | AAH47457.1 |
Target Gene Details
Entrez Gene ID: | 3682 |
Gene Name: | integrin subunit alpha E |
Gene Aliases: |
CD103, HUMINAE |
Location: |
Chr.17:3714625-3803766 on Build GRCh38 |
Assay Gene Location: | Within Intron 27 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
ITGAE | NM_002208.4 | NP_002199.3 | ||
XM_011523823.2 | XP_011522125.1 | |||
XM_011523825.2 | XP_011522127.1 | |||
XM_011523827.2 | XP_011522129.1 | |||
XM_011523828.2 | XP_011522130.1 | |||
XM_017024586.1 | XP_016880075.1 | |||
BC113436.1 | ||||
BC117207.1 | ||||
L25851.2 | AAB59359.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv574237 | Chr.17:3486822 - 3729542 on Build GRCh38 | Loss | GSG2 P2RX5-TAX1BP3 EMC6 SHPK ASPA CTNS TAX1BP3 SPATA22 TRPV1 P2RX5 ITGAE TRPV3 |
nsv1065489 | Chr.17:2631416 - 3948349 on Build GRCh38 | Gain | OR3A4P NCBP3 OR3A1 ASPA LOC101927911 CTNS MIR6776 TAX1BP3 P2RX5 RAP1GAP2 OR1E2 ATP2A3 OR1D4 GSG2 SHPK LOC105371592 OR1A1 TRPV1 OR1G1 OR1A2 OR1D2 OR3A2 LOC105371591 P2RX1 CLUH OR1D5 PAFAH1B1 ITGAE OR3A3 MIR1253 P2RX5-TAX1BP3 CCDC92B EMC6 OR1E1 SPATA22 CAMKK1 TRPV3 |
nsv469791 | Chr.17:3700760 - 3885899 on Build GRCh38 | Loss | GSG2 NCBP3 CAMKK1 ITGAE |
nsv1055740 | Chr.17:3381841 - 3890153 on Build GRCh38 | Gain | NCBP3 OR3A2 ASPA CTNS TAX1BP3 P2RX5 ITGAE OR3A3 OR1E2 GSG2 P2RX5-TAX1BP3 EMC6 SHPK OR1E1 SPATA22 CAMKK1 TRPV1 TRPV3 |
nsv833342 | Chr.17:3626188 - 3806082 on Build GRCh38 | Loss | GSG2 P2RX5-TAX1BP3 EMC6 SHPK CTNS TAX1BP3 P2RX5 ITGAE |
More Information
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |