Assay Details
Target Gene Details
Entrez Gene ID: | 29844 |
Gene Name: | TCF3 fusion partner |
Gene Aliases: |
FB1, INO80F, amida |
Location: |
Chr.19:54107013-54115675 on Build GRCh38 |
Assay Gene Location: | Within Intron 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TFPT | NM_001321792.1 | NP_001308721.1 | ||
NM_013342.3 | NP_037474.1 | |||
XM_005278261.1 | XP_005278318.1 | |||
AF052052.1 | AAD45182.1 | |||
AK310627.1 | ||||
AK310647.1 | ||||
BC004281.1 | AAH04281.1 | |||
BC007776.2 | AAH07776.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2718853 | Chr.19:54109493 - 54110225 on Build GRCh38 | Deletion | TFPT |
nsv1056177 | Chr.19:54073048 - 54112306 on Build GRCh38 | Gain | OSCAR NDUFA3 TFPT TARM1 |
nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion | VSTM1 OSCAR NDUFA3 PRPF31 TFPT TARM1 |
nsv515623 | Chr.19:54102901 - 54179150 on Build GRCh38 | Loss | LENG1 CNOT3 NDUFA3 PRPF31 TFPT MBOAT7 TMC4 |
nsv953613 | Chr.19:54097214 - 54198733 on Build GRCh38 | Deletion | TSEN34 LENG1 OSCAR CNOT3 NDUFA3 PRPF31 TFPT MBOAT7 TMC4 |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | MIR1323 MIR526B ZNF818P MIR525 ZNF665 MIR519E MIR519A1 MIR521-2 MIR520E MIR4752 MIR519A2 MIR512-2 MIR517A ZNF761 ZNF765 MIR373 MIR520H MIR520A LOC284379 TPM3P9 VSTM1 MIR521-1 PRKCG CACNG8 NDUFA3 LILRB2 BIRC8 MIR519C MIR519D OSCAR MIR516A2 LILRB5 MIR519B MIR371B MIR518F MIR498 MIR523 MIR515-1 MBOAT7 TSEN34 MIR516B2 MIR526A1 MIR518C NLRP12 MIR1283-1 PRPF31 MIR935 MIR518E MIR518B LOC105372457 ZNF845 TARM1 VN1R2 MIR520B MIR520C DPRX MIR518A2 MIR517B MIR524 MIR372 ZNF331 MIR518A1 MIR526A2 MYADM CACNG7 LILRA5 ZNF677 MIR520D TMC4 MIR512-1 MIR1283-2 MIR517C ZNF525 MIR518D MIR520F MIR515-2 MIR527 ZNF813 CACNG6 FAM90A27P LENG1 MIR371A MIR520G CNOT3 MIR522 MIR516A1 TFPT VN1R4 MIR516B1 LILRA6 RPS9 LILRB3 |
nsv470157 | Chr.19:54063999 - 54127773 on Build GRCh38 | Loss | OSCAR NDUFA3 PRPF31 TFPT TARM1 |
esv3893246 | Chr.19:54081109 - 54111207 on Build GRCh38 | Gain | OSCAR NDUFA3 TFPT TARM1 |
nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss | VSTM1 OSCAR CACNG8 NDUFA3 PRPF31 MIR935 TFPT TARM1 CACNG6 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |