Assay Details
Target Gene Details
Entrez Gene ID: | 51573 |
Gene Name: | glycerophosphodiester phosphodiesterase 1 |
Gene Aliases: |
363E6.2, MIR16 |
Location: |
Chr.16:19501693-19522145 on Build GRCh38 |
Assay Gene Location: | Within Exon 6 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GDE1 | NM_001324066.1 | 6 | 1666 | NP_001310995.1 |
NM_001324067.1 | 5 | 1577 | NP_001310996.1 | |
NM_016641.3 | 6 | 1653 | NP_057725.1 | |
NR_136689.1 | 6 | 1702 | ||
AF306698.1 | 6 | 1562 | ||
BC014981.1 | 6 | 1544 | AAH14981.1 | |
BC025273.1 | AAH25273.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv833163 | Chr.16:19457512 - 19628716 on Build GRCh38 | Gain | C16orf62 CCP110 TMC5 GDE1 |
nsv571582 | Chr.16:19038056 - 19790801 on Build GRCh38 | Gain | CLEC19A C16orf62 CCP110 LOC102723385 SYT17 ITPRIPL2 COQ7 TMC5 GDE1 IQCK KNOP1 TMC7 |
nsv436835 | Chr.16:18930652 - 21500976 on Build GRCh38 | Insertion | ACSM2A SMG1P3 COQ7 TMC5 GP2 KNOP1 CLEC19A PDILT ACSM2B ZP2 ERI2 LOC102723385 ANKS4B UMOD LOC100190986 ACSM3 TMEM159 IQCK DCUN1D3 DNAH3 CRYM-AS1 C16orf62 CCP110 THUMPD1 ACSM5 ACSM1 GDE1 CRYM SNX29P1 LOC81691 LYRM1 NPIPB3 SYT17 GPRC5B ITPRIPL2 GPR139 TMC7 |
More Information
Additional Information:
For this assay, SNP(s) [rs76065554] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |