Assay Details
Target Gene Details
Entrez Gene ID: | 26168 |
Gene Name: | SUMO1/sentrin/SMT3 specific peptidase 3 |
Gene Aliases: |
SMT3IP1, SSP3, Ulp1 |
Location: |
Chr.17:7561992-7571969 on Build GRCh38 |
Assay Gene Location: | Within Exon 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3 | NM_015670.5 | 2 | 458 | NP_056485.2 |
AF199459.1 | 2 | 245 | AAL25652.1 | |
AL557688.3 | 2 | 497 | ||
AL834294.1 | 2 | 252 | CAD38967.1 | |
AY008763.1 | 2 | 226 | AAG33252.1 | |
BC080658.1 | 2 | 440 | AAH80658.1 | |
BQ956948.1 | 2 | 458 | ||
CX165088.1 | 2 | 394 |
Target Gene Details
Entrez Gene ID: | 100533955 |
Gene Name: | SENP3-EIF4A1 readthrough (NMD candidate) |
Gene Aliases: |
- |
Location: |
Chr.17:7561992-7579006 on Build GRCh38 |
Assay Gene Location: | Within Exon 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3-EIF4A1 | NR_037926.1 | 2 | 458 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422288 | Chr.17:6789933 - 7646709 on Build GRCh38 | Deletion | SPEM1 ALOX12 SLC35G6 FBXO39 CTDNEP1 FXR2 TNK1 ASGR2 DVL2 MIR497 BCL6B ELP5 ACAP1 CLDN7 CHRNB1 GPS2 CD68 FGF11 DLG4 KCTD11 SNORD10 C17orf74 LOC107983988 TMEM256 NEURL4 TEKT1 ALOX12-AS1 NLGN2 SLC16A13 SENP3 ZBTB4 MIR497HG YBX2 EIF5A TNFSF12-TNFSF13 TMEM256-PLSCR3 PHF23 GABARAP ASGR1 LOC100996842 TMEM95 MIR324 C17orf49 SOX15 MPDU1 SENP3-EIF4A1 TNFSF12 POLR2A TMEM102 MIR195 SLC2A4 RNASEK ALOX12P2 SLC16A11 CLEC10A ACADVL PLSCR3 SNORA67 EIF4A1 RNASEK-C17orf49 SAT2 ATP1B2 TNFSF13 SNORA48 SHBG |
nsv574322 | Chr.17:7010333 - 7689462 on Build GRCh38 | Loss | SPEM1 ALOX12 SLC35G6 CTDNEP1 FXR2 TNK1 ASGR2 DVL2 MIR497 BCL6B ELP5 ACAP1 CLDN7 CHRNB1 GPS2 CD68 FGF11 DLG4 KCTD11 SNORD10 C17orf74 LOC107983988 TMEM256 NEURL4 ALOX12-AS1 NLGN2 SLC16A13 SENP3 ZBTB4 MIR497HG YBX2 EIF5A TNFSF12-TNFSF13 TMEM256-PLSCR3 PHF23 GABARAP ASGR1 LOC100996842 TMEM95 MIR324 C17orf49 SOX15 MPDU1 SENP3-EIF4A1 TNFSF12 POLR2A TMEM102 MIR195 WRAP53 SLC2A4 RNASEK SLC16A11 CLEC10A ACADVL PLSCR3 SNORA67 EIF4A1 RNASEK-C17orf49 TP53 SAT2 ATP1B2 TNFSF13 SNORA48 SHBG |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |