Assay Details
Target Gene Details
Entrez Gene ID: | 26168 |
Gene Name: | SUMO1/sentrin/SMT3 specific peptidase 3 |
Gene Aliases: |
SMT3IP1, SSP3, Ulp1 |
Location: |
Chr.17:7561992-7571969 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 1 - Exon 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3 | NM_015670.5 | NP_056485.2 | ||
AF199459.1 | AAL25652.1 | |||
AL557688.3 | ||||
AL834294.1 | CAD38967.1 | |||
AY008763.1 | AAG33252.1 | |||
BC080658.1 | AAH80658.1 | |||
BQ956948.1 | ||||
CX165088.1 |
Target Gene Details
Entrez Gene ID: | 100533955 |
Gene Name: | SENP3-EIF4A1 readthrough (NMD candidate) |
Gene Aliases: |
- |
Location: |
Chr.17:7561992-7579006 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 1 - Exon 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3-EIF4A1 | NR_037926.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422288 | Chr.17:6789933 - 7646709 on Build GRCh38 | Deletion | SNORA48 ATP1B2 NEURL4 CLEC10A MIR497HG ACAP1 SLC2A4 DVL2 MIR497 BCL6B DLG4 SNORA67 SLC35G6 EIF4A1 ASGR2 GABARAP CD68 ALOX12P2 CHRNB1 TMEM256-PLSCR3 FXR2 SLC16A13 ZBTB4 GPS2 SPEM1 CTDNEP1 SAT2 C17orf74 PHF23 TEKT1 PLSCR3 FBXO39 CLDN7 TMEM256 MPDU1 EIF5A SENP3-EIF4A1 SLC16A11 TMEM95 TNK1 TMEM102 SOX15 SENP3 ELP5 POLR2A RNASEK MIR195 TNFSF13 YBX2 TNFSF12 TNFSF12-TNFSF13 RNASEK-C17orf49 MIR324 ACADVL SHBG SNORD10 LOC100996842 FGF11 C17orf49 NLGN2 LOC107983988 KCTD11 ASGR1 ALOX12 ALOX12-AS1 |
nsv574322 | Chr.17:7010333 - 7689462 on Build GRCh38 | Loss | SNORA48 ATP1B2 NEURL4 CLEC10A MIR497HG ACAP1 SLC2A4 DVL2 MIR497 BCL6B DLG4 SNORA67 SLC35G6 EIF4A1 ASGR2 GABARAP CD68 CHRNB1 TMEM256-PLSCR3 FXR2 SLC16A13 ZBTB4 GPS2 SPEM1 CTDNEP1 SAT2 C17orf74 PHF23 PLSCR3 CLDN7 TMEM256 MPDU1 EIF5A SENP3-EIF4A1 SLC16A11 TMEM95 TNK1 TMEM102 SOX15 SENP3 ELP5 POLR2A RNASEK TP53 MIR195 TNFSF13 YBX2 TNFSF12 TNFSF12-TNFSF13 RNASEK-C17orf49 MIR324 ACADVL SHBG SNORD10 LOC100996842 FGF11 C17orf49 NLGN2 LOC107983988 KCTD11 ASGR1 ALOX12 WRAP53 ALOX12-AS1 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |