Assay Details
Target Gene Details
Entrez Gene ID: | 23483 |
Gene Name: | TDP-glucose 4,6-dehydratase |
Gene Aliases: |
CATMANS, SDR2E1, TDPGD |
Location: |
Chr.13:94574054-94596275 on Build GRCh38 |
Assay Gene Location: | Within Exon 12 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TGDS | NM_001304430.1 | 12 | 1570 | NP_001291359.1 |
NM_014305.3 | 12 | 1494 | NP_055120.1 | |
NR_130731.1 | 12 | 1490 | ||
NR_130732.1 | 11 | 1403 | ||
XM_011521065.2 | 12 | 1497 | XP_011519367.1 | |
XM_011521066.2 | 12 | 1378 | XP_011519368.1 | |
AF048686.1 | 12 | 1396 | AAD50061.1 | |
AJ006068.1 | 12 | 1448 | CAA06840.1 | |
BC033675.1 | 12 | 1423 | AAH33675.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv832686 | Chr.13:94554488 - 94748738 on Build GRCh38 | Gain | TGDS GPR180 SOX21 LOC101927248 SOX21-AS1 |
nsv832685 | Chr.13:94527422 - 94627712 on Build GRCh38 | Gain | TGDS DCT GPR180 |
esv34004 | Chr.13:94254283 - 94740390 on Build GRCh38 | Loss | TGDS GPC6 DCT GPR180 SOX21 LOC101927248 SOX21-AS1 |
nsv562756 | Chr.13:94526063 - 94585900 on Build GRCh38 | Gain | TGDS DCT |
More Information
Additional Information:
For this assay, SNP(s) [rs77009259] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |