Assay Details
Target Gene Details
Entrez Gene ID: | 83986 |
Gene Name: | family with sequence similarity 234 member A |
Gene Aliases: |
C16orf9, ITFG3, gs19 |
Location: |
Chr.16:234546-269943 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 8 - Exon 9 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
FAM234A | NM_001284497.1 | NP_001271426.1 | ||
NM_032039.3 | NP_114428.1 | |||
NR_104317.1 | ||||
XM_005255622.1 | XP_005255679.1 | |||
XM_005255623.2 | XP_005255680.1 | |||
XM_006720957.1 | XP_006721020.1 | |||
XM_011522691.1 | XP_011520993.1 | |||
XM_011522692.1 | XP_011520994.1 | |||
XM_017023760.1 | XP_016879249.1 | |||
XM_017023761.1 | XP_016879250.1 | |||
XM_017023762.1 | XP_016879251.1 | |||
XM_017023763.1 | XP_016879252.1 | |||
XM_017023764.1 | XP_016879253.1 | |||
XM_017023765.1 | XP_016879254.1 | |||
AK057165.1 | BAB71374.1 | |||
AK294581.1 | ||||
AK310766.1 | ||||
AL136542.1 | CAB66477.1 | |||
BC010521.1 | AAH10521.1 | |||
BC013047.1 | AAH13047.1 | |||
BC032112.2 | AAH32112.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422427 | Chr.16:10001 - 2723164 on Build GRCh38 | Duplication | PRR35 MIR6511B1 MIR3677 WDR24 SYNGR3 TELO2 NOXO1 BAIAP3 AXIN1 SNHG9 LOC106660606 MIR6767 NTN3 LOC100287175 CHTF18 NME4 PGP RHBDF1 RAB26 SNRNP25 RGS11 CLCN7 C16orf91 SNORA10 FAM173A ERVK13-1 LOC105371049 PRR25 MIR3176 HBZ LOC105371047 RPS2 STUB1 LMF1-AS1 PIGQ MIR4516 SSTR5-AS1 DECR2 C1QTNF8 IGFALS MCRIP2 MLST8 TPSG1 TMEM8A LOC100134368 NDUFB10 ECI1 ABCA3 MEIOB MIR6768 CCDC154 HBQ1 PKD1 CCDC78 MRPS34 NUBP2 TMEM204 DDX11L10 LOC105371038 WASIR2 FAHD1 SNORA64 NARFL MRPL28 MIR6859-4 TRAF7 FBXL16 CEMP1 PDIA2 CAPN15 MSRB1 WDR90 CACNA1H TSR3 MIR5587 MIR4717 CCNF MIR662 TPSAB1 DNASE1L2 CRAMP1 LOC107984876 LOC105371184 GNPTG PRSS29P NPW HAGH MIR3178 HBM LINC00235 RAB40C RHBDL1 LOC105371046 HS3ST6 TPSD1 MIR3177 SNORD60 PRSS27 AMDHD2 TBC1D24 LMF1 PTX4 SOX8 ABCA17P NME3 MSLN IFT140 RNF151 BRICD5 LINC00254 EME2 RPL23AP5 UNKL GNG13 JMJD8 RPUSD1 TBL3 LOC729652 METTL26 MIR1225 ZNF598 NTHL1 ARHGDIG LOC652276 RPL3L HBA2 SNORA78 SNHG19 LOC107987233 MIR3180-5 LUC7L SLC9A3R2 HAGHL MAPK8IP3 LOC105371045 FLJ42627 C16orf59 CASKIN1 WFIKKN1 HBA1 E4F1 RHOT2 PDPK1 HN1L FAM234A METRN UBE2I ATP6V0C NHLRC4 POLR3K TSC2 MIR940 SSTR5 RAB11FIP3 SPSB3 TPSB2 NPRL3 MPG GFER KCTD5 RNPS1 LOC101929280 |
esv3570031 | Chr.16:243389 - 278107 on Build GRCh38 | Gain | RGS11 FAM234A |
dgv32n68 | Chr.16:245507 - 476226 on Build GRCh38 | Loss | AXIN1 PDIA2 RGS11 DECR2 RAB11FIP3 FAM234A ARHGDIG RPL23AP5 MRPL28 TMEM8A LOC100134368 NME4 |
More Information
Additional Information:
For this assay, SNP(s) [rs74003710,rs78641696] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Non-exonic DGV Variation |