Hs02774356_cn

• Gene Symbol: PCDHGA1
• Assay Reference Genome Location: Chr.5:141423877 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56114
• Gene Name: protocadherin gamma subfamily A, 1
• Gene Aliases: PCDH-GAMMA-A1
• Location: Chr.5:141330685-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA1	NM_018912.2			NP_061735.1
	AF152318.1			AAD43712.1

Target Gene Details

• Entrez Gene ID: 56106
• Gene Name: protocadherin gamma subfamily A, 10
• Gene Aliases: PCDH-GAMMA-A10
• Location: Chr.5:141413176-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA10	NM_018913.2			NP_061736.1
	AF152319.1			AAD43713.1

Target Gene Details

• Entrez Gene ID: 56105
• Gene Name: protocadherin gamma subfamily A, 11
• Gene Aliases: PCDH-GAMMA-A11
• Location: Chr.5:141420970-141512979 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA11	NM_018914.2			NP_061737.1
	NM_032091.1	1	2908	NP_114480.1
	NM_032092.1			NP_114481.1
	AF152320.1			AAD43714.1
	AF152504.1			AAD43765.1
	BC136781.1
	BC171774.1
	BE007760.1	1	210
	BF327891.1	1	234

Target Gene Details

• Entrez Gene ID: 56113
• Gene Name: protocadherin gamma subfamily A, 2
• Gene Aliases: PCDH-GAMMA-A2
• Location: Chr.5:141338760-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA2	NM_018915.3			NP_061738.1
	AF152322.1			AAD43716.1

Target Gene Details

• Entrez Gene ID: 56112
• Gene Name: protocadherin gamma subfamily A, 3
• Gene Aliases: PCDH-GAMMA-A3
• Location: Chr.5:141344034-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA3	NM_018916.3			NP_061739.2
	AB208927.1			BAD92164.1
	AF152323.1			AAD43717.1

Target Gene Details

• Entrez Gene ID: 56111
• Gene Name: protocadherin gamma subfamily A, 4
• Gene Aliases: PCDH-GAMMA-A4
• Location: Chr.5:141355025-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA4	NM_018917.3			NP_061740.2
	AF152324.1			AAD43718.1

Target Gene Details

• Entrez Gene ID: 56110
• Gene Name: protocadherin gamma subfamily A, 5
• Gene Aliases: CDH-GAMMA-A5, ME3, PCDH-GAMMA-A5
• Location: Chr.5:141364331-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA5	NM_018918.2			NP_061741.1
	AF152325.1			AAD43719.1

Target Gene Details

• Entrez Gene ID: 56109
• Gene Name: protocadherin gamma subfamily A, 6
• Gene Aliases: PCDH-GAMMA-A6
• Location: Chr.5:141374084-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA6	NM_018919.2			NP_061742.1
	AB209178.1			BAD92415.1
	AF152326.1			AAD43720.1
	BC146651.1

Target Gene Details

• Entrez Gene ID: 56108
• Gene Name: protocadherin gamma subfamily A, 7
• Gene Aliases: PCDH-GAMMA-A7
• Location: Chr.5:141382739-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA7	NM_018920.3			NP_061743.1
	AB208958.1			BAD92195.1
	AF152327.1			AAD43721.1

Target Gene Details

• Entrez Gene ID: 9708
• Gene Name: protocadherin gamma subfamily A, 8
• Gene Aliases: PCDH-GAMMA-A8
• Location: Chr.5:141391916-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA8	NM_032088.1			NP_114477.1
	AF152328.1			AAD43722.1

Target Gene Details

• Entrez Gene ID: 56107
• Gene Name: protocadherin gamma subfamily A, 9
• Gene Aliases: PCDH-GAMMA-A9
• Location: Chr.5:141402953-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA9	NM_018921.2			NP_061744.1
	AF152329.1			AAD43723.1

Target Gene Details

• Entrez Gene ID: 56104
• Gene Name: protocadherin gamma subfamily B, 1
• Gene Aliases: PCDH-GAMMA-B1
• Location: Chr.5:141350261-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB1	NM_018922.2			NP_061745.1
	AF152330.1			AAD43724.1

Target Gene Details

• Entrez Gene ID: 56103
• Gene Name: protocadherin gamma subfamily B, 2
• Gene Aliases: PCDH-GAMMA-B2
• Location: Chr.5:141360136-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB2	NM_018923.2			NP_061746.1
	AF152331.1			AAD43725.1

Target Gene Details

• Entrez Gene ID: 56102
• Gene Name: protocadherin gamma subfamily B, 3
• Gene Aliases: PCDH-GAMMA-B3
• Location: Chr.5:141370264-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB3	NM_018924.4			NP_061747.2
	AF152332.1			AAD43726.1
	BC150172.1

Target Gene Details

• Entrez Gene ID: 8641
• Gene Name: protocadherin gamma subfamily B, 4
• Gene Aliases: CDH20, FIB2, PCDH-GAMMA-B4
• Location: Chr.5:141387885-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB4	NM_003736.2			NP_003727.1
	AF152333.1			AAD43727.1

Target Gene Details

• Entrez Gene ID: 56101
• Gene Name: protocadherin gamma subfamily B, 5
• Gene Aliases: PCDH-GAMMA-B5
• Location: Chr.5:141398128-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB5	NM_018925.2			NP_061748.1
	AF152334.1			AAD43728.1

Target Gene Details

• Entrez Gene ID: 56100
• Gene Name: protocadherin gamma subfamily B, 6
• Gene Aliases: PCDH-GAMMA-B6
• Location: Chr.5:141408203-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB6	NM_018926.2			NP_061749.1
	AF152335.1			AAD43729.1

Target Gene Details

• Entrez Gene ID: 56099
• Gene Name: protocadherin gamma subfamily B, 7
• Gene Aliases: ME6, PCDH-GAMMA-B7
• Location: Chr.5:141417647-141512981 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB7	NM_018927.3			NP_061750.1
	AF152336.1			AAD43730.1
	BC051788.2			AAH51788.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHB11 PCDHGA1 PCDHGA7 PCDHB16 PCDHGB6 PCDHB3 PCDHGA4 TAF7 PCDHGB7 PCDHA7 PCDHB4 PCDHB17P PCDHB8 PCDHB6 SLC25A2 PCDHA13 PCDHB1 PCDHGA2 PCDHB18P PCDHB12 PCDHB13 PCDHB5 PCDHGA6 PCDHB9 PCDHGB3 PCDHB14 PCDHGA11 PCDHA3 PCDHA11 PCDHA5 PCDHGA12 LOC101926905 PCDHAC1 PCDHB19P PCDHGA8 PCDHGB8P PCDHA4 PCDHB7 PCDHA10 PCDHGA3 PCDHAC2 PCDHB2 PCDHA2 PCDHA9 PCDHGA9 PCDHA12 PCDHB15 PCDHGB5 PCDHB10 PCDHGB1 PCDHGB4 PCDHGA10 PCDHA8 PCDHA6 PCDHA1 PCDHGB2 PCDHGA5
esv3606987	Chr.5:141415048 - 141430227 on Build GRCh38	Gain	PCDHGA1 PCDHGA7 PCDHGB5 PCDHGB6 PCDHGA4 PCDHGA2 PCDHGA8 PCDHGB8P PCDHGA6 PCDHGB7 PCDHGB1 PCDHGB3 PCDHGB4 PCDHGA3 PCDHGA10 PCDHGB2 PCDHGA11 PCDHGA5 PCDHGA9
nsv519627	Chr.5:141392860 - 141427689 on Build GRCh38	Loss	PCDHGA1 PCDHGA7 PCDHGB5 PCDHGB6 PCDHGA4 PCDHGA2 PCDHGA8 PCDHGB8P PCDHGA6 PCDHGB7 PCDHGB1 PCDHGB3 PCDHGB4 PCDHGA3 PCDHGA10 PCDHGB2 PCDHGA11 PCDHGA5 PCDHGA9
nsv980740	Chr.5:141423094 - 141423853 on Build GRCh38	Duplication	PCDHGA1 PCDHGA7 PCDHGB5 PCDHGB6 PCDHGA4 PCDHGA2 PCDHGA8 PCDHGA6 PCDHGB7 PCDHGB1 PCDHGB3 PCDHGB4 PCDHGA3 PCDHGA10 PCDHGB2 PCDHGA11 PCDHGA5 PCDHGA9
esv2730847	Chr.5:141415403 - 141432967 on Build GRCh38	Deletion	PCDHGA12 PCDHGA1 PCDHGA7 PCDHGB5 PCDHGB6 PCDHGA4 PCDHGA2 PCDHGA8 PCDHGB8P PCDHGA6 PCDHGB7 PCDHGB1 PCDHGB3 PCDHGB4 PCDHGA3 PCDHGA10 PCDHGB2 PCDHGA11 PCDHGA5 PCDHGA9

More Information

Additional Information:

For this assay, SNP(s) [rs73792199] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

homophilic cell adhesion via plasma membrane adhesion molecules
endosome to lysosome transport
lipid tube assembly involved in organelle fusion
cell adhesion
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
biological_process

Function(s)

calcium ion binding
poly(A) RNA binding
molecular_function