Assay Details
Target Gene Details
Entrez Gene ID: | 83903 |
Gene Name: | germ cell associated 2, haspin |
Gene Aliases: |
HASPIN |
Location: |
Chr.17:3723903-3726699 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GSG2 | NM_031965.2 | 1 | 1264 | NP_114171.2 |
AB039834.3 | 1 | 1261 | ||
AF289865.1 | 1 | 1260 | AAK30300.1 | |
AK056691.1 | BAB71255.1 | |||
AK292715.1 | 1 | 1250 | ||
AK310546.1 | 1 | 1264 | ||
AK315247.1 | 1 | 1264 | ||
BC016626.1 | 1 | 1250 | ||
BC047457.1 | 1 | 1245 | AAH47457.1 |
Target Gene Details
Entrez Gene ID: | 3682 |
Gene Name: | integrin subunit alpha E |
Gene Aliases: |
CD103, HUMINAE |
Location: |
Chr.17:3714625-3803766 on Build GRCh38 |
Assay Gene Location: | Within Intron 27 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
ITGAE | NM_002208.4 | NP_002199.3 | ||
XM_011523823.2 | XP_011522125.1 | |||
XM_011523825.2 | XP_011522127.1 | |||
XM_011523827.2 | XP_011522129.1 | |||
XM_011523828.2 | XP_011522130.1 | |||
XM_017024586.1 | XP_016880075.1 | |||
BC113436.1 | ||||
BC117207.1 | ||||
L25851.2 | AAB59359.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv574237 | Chr.17:3486822 - 3729542 on Build GRCh38 | Loss | SHPK ASPA TRPV1 P2RX5-TAX1BP3 TRPV3 EMC6 CTNS SPATA22 GSG2 TAX1BP3 P2RX5 ITGAE |
nsv1065489 | Chr.17:2631416 - 3948349 on Build GRCh38 | Gain | LOC105371591 SHPK LOC105371592 OR1G1 CCDC92B OR1D5 MIR6776 CTNS OR3A3 OR1E2 OR1E1 TAX1BP3 ASPA TRPV1 LOC101927911 TRPV3 RAP1GAP2 CLUH OR3A2 CAMKK1 OR1D2 OR3A4P P2RX5-TAX1BP3 ATP2A3 OR1A1 OR1A2 GSG2 PAFAH1B1 P2RX5 ITGAE MIR1253 OR1D4 OR3A1 EMC6 P2RX1 SPATA22 NCBP3 |
nsv469791 | Chr.17:3700760 - 3885899 on Build GRCh38 | Loss | CAMKK1 GSG2 NCBP3 ITGAE |
nsv1055740 | Chr.17:3381841 - 3890153 on Build GRCh38 | Gain | CAMKK1 SHPK P2RX5-TAX1BP3 CTNS OR3A3 OR1E2 OR1E1 GSG2 TAX1BP3 P2RX5 ITGAE ASPA TRPV1 TRPV3 EMC6 SPATA22 NCBP3 OR3A2 |
nsv833342 | Chr.17:3626188 - 3806082 on Build GRCh38 | Loss | SHPK P2RX5-TAX1BP3 EMC6 CTNS GSG2 TAX1BP3 P2RX5 ITGAE |
More Information
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |