Assay Details
Target Gene Details
Entrez Gene ID: | 152992 |
Gene Name: | tRNA methyltransferase 44 homolog (S. cerevisiae) |
Gene Aliases: |
C4orf23, METTL19, TRM44 |
Location: |
Chr.4:8440774-8512531 on Build GRCh38 |
Assay Gene Location: | Within Intron 6 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TRMT44 | NM_152544.2 | NP_689757.2 | ||
XM_005247950.3 | XP_005248007.1 | |||
XM_011513406.2 | XP_011511708.1 | |||
XM_011513407.2 | XP_011511709.1 | |||
XM_011513408.1 | XP_011511710.1 | |||
XM_011513409.2 | XP_011511711.1 | |||
XM_011513410.2 | XP_011511712.1 | |||
XM_017007811.1 | XP_016863300.1 | |||
BC035655.1 | AAH35655.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv461220 | Chr.4:8371217 - 8456667 on Build GRCh38 | Loss | ACOX3 TRMT44 |
nsv1002794 | Chr.4:8108356 - 8489207 on Build GRCh38 | Gain | ACOX3 ABLIM2 SH3TC1 HTRA3 TRMT44 |
nsv1005698 | Chr.4:8434559 - 10248775 on Build GRCh38 | Gain | LOC100133128 USP17L25 LOC650293 HMX1 USP17L27 USP17L13 MIR3138 USP17L30 LOC101928532 USP17L5 USP17L22 USP17L21 DEFB131 TRMT44 USP17L12 USP17L9P USP17L17 CPZ USP17L26 USP17L6P DRD5 USP17L18 FAM86KP SLC2A9 USP17L24 WDR1 USP17L11 ACOX3 USP17L28 USP17L19 USP17L29 OR7E35P OR7E85P USP17L20 USP17L10 USP17L15 GPR78 MIR548I2 |
nsv829854 | Chr.4:8401194 - 8504680 on Build GRCh38 | Gain+Loss | ACOX3 TRMT44 |
More Information
Additional Information:
For this assay, SNP(s) [rs73211401] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |