Assay Details
Target Gene Details
Entrez Gene ID: | 152992 |
Gene Name: | tRNA methyltransferase 44 homolog (S. cerevisiae) |
Gene Aliases: |
C4orf23, METTL19, TRM44 |
Location: |
Chr.4:8440774-8512531 on Build GRCh38 |
Assay Gene Location: | Overlaps Exon 10 - Intron 10 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TRMT44 | NM_152544.2 | NP_689757.2 | ||
XM_005247950.3 | XP_005248007.1 | |||
XM_011513406.2 | XP_011511708.1 | |||
XM_011513407.2 | XP_011511709.1 | |||
XM_011513408.1 | XP_011511710.1 | |||
XM_011513409.2 | XP_011511711.1 | |||
AK093044.1 | BAC04031.1 | |||
BC035655.1 | AAH35655.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1002794 | Chr.4:8108356 - 8489207 on Build GRCh38 | Gain | TRMT44 ABLIM2 ACOX3 HTRA3 SH3TC1 |
nsv1005698 | Chr.4:8434559 - 10248775 on Build GRCh38 | Gain | TRMT44 USP17L26 HMX1 USP17L30 USP17L19 USP17L13 USP17L5 USP17L18 USP17L24 CPZ GPR78 USP17L17 LOC100133128 OR7E85P USP17L25 USP17L12 FAM86KP DEFB131 OR7E35P WDR1 LOC101928532 LOC650293 MIR3138 USP17L22 USP17L20 USP17L28 USP17L6P USP17L11 ACOX3 USP17L15 USP17L21 USP17L27 USP17L10 SLC2A9 MIR548I2 USP17L29 DRD5 USP17L9P |
nsv829854 | Chr.4:8401194 - 8504680 on Build GRCh38 | Gain+Loss | TRMT44 ACOX3 |
More Information
Additional Information:
For this assay, SNP(s) [rs114298289] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Non-exonic DGV Variation |