Assay Details
Target Gene Details
Entrez Gene ID: | 83707 |
Gene Name: | tRNA phosphotransferase 1 |
Gene Aliases: |
- |
Location: |
Chr.11:64223799-64226254 on Build GRCh38 |
Assay Gene Location: | Within Exon 5 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TRPT1 | NM_001033678.3 | 5 | 619 | NP_001028850.2 |
NM_001160389.1 | 5 | 625 | NP_001153861.1 | |
NM_001160390.1 | 5 | 607 | NP_001153862.1 | |
NM_001160392.1 | 5 | 619 | NP_001153864.1 | |
NM_001160393.1 | 4 | 414 | NP_001153865.1 | |
NM_031472.3 | 4 | 535 | NP_113660.1 | |
XM_005274345.4 | 5 | 539 | XP_005274402.1 | |
XM_005274346.4 | 5 | 498 | XP_005274403.1 | |
XM_005274347.4 | 4 | 415 | XP_005274404.1 | |
XM_006718706.3 | 5 | 501 | XP_006718769.1 | |
XM_006718707.3 | 5 | 448 | XP_006718770.1 | |
XM_017018400.1 | 4 | 415 | XP_016873889.1 | |
XM_017018401.1 | 4 | 490 | XP_016873890.1 | |
AK026364.1 | 4 | 1128 | ||
AY211494.1 | 5 | 575 | AAO62941.1 | |
BC005133.2 | 4 | 431 | AAH05133.1 | |
BG105545.1 | 5 | 551 | ||
BM982538.1 | 4 | 406 | ||
BQ672032.1 | 4 | 433 | ||
BQ674339.1 | 4 | 357 | ||
DR004975.1 | 5 | 523 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1159904 | Chr.11:64150129 - 64279169 on Build GRCh38 | Deletion | BAD NUDT22 DNAJC4 FERMT3 MACROD1 VEGFB STIP1 TRPT1 FKBP2 LOC105369340 PLCB3 PPP1R14B GPR137 |
nsv951010 | Chr.11:63942829 - 64352128 on Build GRCh38 | Deletion | TRMT112 COX8A NUDT22 NAA40 DNAJC4 FERMT3 PRDX5 FLRT1 CCDC88B BAD TEX40 OTUB1 MIR7155 KCNK4 MACROD1 VEGFB STIP1 ESRRA KCNK4-TEX40 TRPT1 FKBP2 LOC105369340 PLCB3 PPP1R14B GPR137 |
dgv1963n54 | Chr.11:64174262 - 64329761 on Build GRCh38 | Loss | TRMT112 BAD NUDT22 TEX40 DNAJC4 FERMT3 KCNK4 PRDX5 VEGFB STIP1 ESRRA KCNK4-TEX40 TRPT1 FKBP2 LOC105369340 PLCB3 PPP1R14B GPR137 |
nsv555187 | Chr.11:64185649 - 64260416 on Build GRCh38 | Loss | VEGFB NUDT22 STIP1 TRPT1 FKBP2 LOC105369340 PLCB3 DNAJC4 PPP1R14B FERMT3 |
nsv832186 | Chr.11:64204788 - 64402587 on Build GRCh38 | Loss | MIR1237 TRMT112 BAD NUDT22 TEX40 MIR7155 DNAJC4 FERMT3 KCNK4 PRDX5 VEGFB ESRRA KCNK4-TEX40 TRPT1 FKBP2 LOC105369340 CCDC88B PLCB3 PPP1R14B RPS6KA4 GPR137 |
nsv555184 | Chr.11:64156974 - 64275525 on Build GRCh38 | Loss | BAD NUDT22 DNAJC4 FERMT3 MACROD1 VEGFB STIP1 TRPT1 FKBP2 LOC105369340 PLCB3 PPP1R14B GPR137 |
nsv469961 | Chr.11:64055468 - 64318495 on Build GRCh38 | Loss | TRMT112 BAD NUDT22 TEX40 DNAJC4 FERMT3 KCNK4 MACROD1 PRDX5 VEGFB STIP1 FLRT1 ESRRA KCNK4-TEX40 TRPT1 FKBP2 LOC105369340 PLCB3 PPP1R14B GPR137 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |