Assay Details
Target Gene Details
Entrez Gene ID: | 2196 |
Gene Name: | FAT atypical cadherin 2 |
Gene Aliases: |
CDHF8, CDHR9, HFAT2, MEGF1 |
Location: |
Chr.5:151504092-151594822 on Build GRCh38 |
Assay Gene Location: | Within Exon 30 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
FAT2 | NM_001447.2 | 23 | 14160 | NP_001438.1 |
XM_006714761.3 | 24 | 14731 | XP_006714824.1 | |
XM_011537600.2 | 26 | 14499 | XP_011535902.1 | |
XM_011537603.2 | 24 | 14432 | XP_011535905.1 | |
XM_017009224.1 | 26 | 14501 | XP_016864713.1 | |
XM_017009225.1 | 25 | 14343 | XP_016864714.1 | |
AB011535.1 | 5 | 2819 | BAA32463.1 | |
AB160984.1 | 11 | 4470 | BAD08246.1 | |
AB177851.1 | 5 | 2819 | BAD66829.1 | |
AF231022.1 | 23 | 14160 | AAF61928.1 | |
AL157443.1 | 2 | 1726 | CAB75663.1 | |
BC039143.2 | 6 | 3322 | AAH39143.1 |
Target Gene Details
Entrez Gene ID: | 206358 |
Gene Name: | solute carrier family 36 member 1 |
Gene Aliases: |
Dct1, LYAAT1, PAT1, TRAMD3 |
Location: |
Chr.5:151411344-151556318 on Build GRCh38 |
Assay Gene Location: | Within Intron 19 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SLC36A1 | XM_011537595.2 | XP_011535897.2 | ||
XM_017009217.1 | XP_016864706.1 | |||
XM_017009219.1 | XP_016864708.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv3890753 | Chr.5:151428994 - 151572020 on Build GRCh38 | Gain | MIR6499 FAT2 SLC36A1 |
nsv527096 | Chr.5:151498616 - 151525837 on Build GRCh38 | Loss | MIR6499 FAT2 SLC36A1 |
More Information
Additional Information:
For this assay, SNP(s) [rs73798916] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |