Assay Details
Target Gene Details
Entrez Gene ID: | 2840 |
Gene Name: | G protein-coupled receptor 17 |
Gene Aliases: |
- |
Location: |
Chr.2:127645864-127652639 on Build GRCh38 |
Assay Gene Location: | Within Exon 4 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GPR17 | NM_001161415.1 | 4 | 1076 | NP_001154887.1 |
NM_001161416.1 | 3 | 1011 | NP_001154888.1 | |
NM_001161417.1 | 2 | 782 | NP_001154889.1 | |
NM_005291.2 | 3 | 847 | NP_005282.1 | |
XM_017003833.1 | 2 | 1203 | XP_016859322.1 | |
AK126849.1 | 1 | 2037 | ||
AK292725.1 | 2 | 652 | ||
AK313949.1 | 2 | 538 | ||
BC031653.1 | 2 | 461 | AAH31653.1 | |
BX538082.1 | CAD98006.1 | |||
DA314295.1 | ||||
JF810891.1 | 1 | 381 | ||
Y12546.1 | 3 | 539 | CAA73144.1 | |
Z94154.1 | 2 | 475 | CAB08107.1 | |
Z94155.1 | 1 | 259 | CAB08108.1 |
Target Gene Details
Entrez Gene ID: | 55679 |
Gene Name: | LIM zinc finger domain containing 2 |
Gene Aliases: |
LGMD2W, PINCH-2, PINCH2 |
Location: |
Chr.2:127638421-127681786 on Build GRCh38 |
Assay Gene Location: | Within Intron 8 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LIMS2 | NM_001136037.2 | NP_001129509.2 | ||
NM_001161403.1 | NP_001154875.1 | |||
NM_001161404.1 | NP_001154876.1 | |||
NM_017980.4 | NP_060450.2 | |||
XM_005263710.2 | XP_005263767.1 | |||
XM_006712627.3 | XP_006712690.1 | |||
XM_011511453.1 | XP_011509755.1 | |||
AF484961.1 | AAM97589.1 | |||
AF520987.1 | AAM77350.1 | |||
AF527764.1 | AAQ09011.1 | |||
AF527765.1 | AAQ09012.1 | |||
AF527766.1 | AAQ09013.1 | |||
AF527767.1 | AAQ09014.1 | |||
AK000906.1 | BAA91419.1 | |||
AK022470.1 | BAB14047.1 | |||
AK055363.1 | ||||
AK091652.1 | ||||
AK094954.1 | ||||
AK095790.1 | ||||
AK123014.1 | ||||
AK297645.1 | ||||
BC065816.1 | AAH65816.1 | |||
DC356496.1 | ||||
DR006887.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
dgv4069n100 | Chr.2:127537744 - 127722066 on Build GRCh38 | Gain | GPR17 SFT2D3 MYO7B LOC105373609 LIMS2 WDR33 |
nsv508864 | Chr.2:127585891 - 127684658 on Build GRCh38 | Insertion | GPR17 MYO7B LIMS2 |
nsv953155 | Chr.2:127617926 - 127665326 on Build GRCh38 | Deletion | GPR17 MYO7B LIMS2 |
nsv470482 | Chr.2:127593233 - 127707973 on Build GRCh38 | Loss | GPR17 SFT2D3 MYO7B LIMS2 WDR33 |
nsv583038 | Chr.2:127641265 - 127718910 on Build GRCh38 | Loss | GPR17 SFT2D3 LIMS2 WDR33 |
More Information
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |