Assay Details
Target Gene Details
Entrez Gene ID: | 58191 |
Gene Name: | C-X-C motif chemokine ligand 16 |
Gene Aliases: |
CXCLG16, SR-PSOX, SRPSOX |
Location: |
Chr.17:4733529-4739928 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 1 - Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
CXCL16 | NM_001100812.1 | NP_001094282.1 | ||
NM_022059.3 | NP_071342.2 | |||
AF275260.1 | AAG31750.1 | |||
AF301016.1 | AAG34365.1 | |||
AF337812.1 | AAK38275.1 | |||
AK027389.1 | BAB55078.1 | |||
AK292114.1 | ||||
AK315017.1 | ||||
AY358909.1 | AAQ89268.1 | |||
BC017588.1 | AAH17588.1 | |||
BC044930.1 | AAH44930.1 | |||
JC209418.1 | ||||
JC209420.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv574273 | Chr.17:4585589 - 5460332 on Build GRCh38 | Gain | ALOX15 TM4SF5 CHRNE SPAG7 MIR6865 LOC101928000 SLC52A1 USP6 ZNF594 CAMTA2 RABEP1 LOC100130950 ZFP3 ZNF232 SMTNL2 C17orf107 LOC101559451 LOC107984973 INCA1 ARRB2 ZMYND15 CXCL16 KIF1C GP1BA SCIMP MINK1 LOC101927979 GLTPD2 C1QBP ENO3 SLC25A11 PLD2 NUP88 LOC102724009 VMO1 MIR6864 DHX33 PELP1 PFN1 MED11 LOC400568 RPAIN RNF167 PSMB6 |
nsv833346 | Chr.17:4646256 - 4860871 on Build GRCh38 | Loss | TM4SF5 MINK1 GLTPD2 PLD2 LOC101559451 VMO1 PELP1 LOC107984973 ARRB2 MED11 ZMYND15 CXCL16 PSMB6 |
nsv1952 | Chr.17:4726245 - 4748889 on Build GRCh38 | Insertion | MED11 ZMYND15 CXCL16 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |