Assay Details
Target Gene Details
Entrez Gene ID: | 26168 |
Gene Name: | SUMO1/sentrin/SMT3 specific peptidase 3 |
Gene Aliases: |
SMT3IP1, SSP3, Ulp1 |
Location: |
Chr.17:7561992-7571969 on Build GRCh38 |
Assay Gene Location: | Overlaps Exon 10 - Intron 10 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3 | NM_015670.5 | NP_056485.2 | ||
AF199459.1 | AAL25652.1 | |||
AL050283.1 | CAB43384.2 | |||
AL834294.1 | CAD38967.1 | |||
AY008763.1 | AAG33252.1 | |||
BC048306.1 | AAH48306.1 | |||
BC080658.1 | AAH80658.1 |
Target Gene Details
Entrez Gene ID: | 100533955 |
Gene Name: | SENP3-EIF4A1 readthrough (NMD candidate) |
Gene Aliases: |
- |
Location: |
Chr.17:7561992-7579006 on Build GRCh38 |
Assay Gene Location: | Overlaps Exon 10 - Intron 10 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3-EIF4A1 | NR_037926.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422288 | Chr.17:6789933 - 7646709 on Build GRCh38 | Deletion | SENP3-EIF4A1 TMEM102 C17orf74 PHF23 KCTD11 MIR195 ASGR2 TNK1 TNFSF13 SAT2 GPS2 TMEM256-PLSCR3 EIF4A1 SLC16A11 ALOX12-AS1 CLDN7 DLG4 SENP3 TNFSF12 LOC100996842 POLR2A RNASEK MIR324 FXR2 C17orf49 TEKT1 ATP1B2 RNASEK-C17orf49 TMEM95 YBX2 CLEC10A ASGR1 ALOX12P2 MIR497HG SNORD10 MPDU1 SHBG SPEM1 ZBTB4 CD68 NLGN2 SLC2A4 ALOX12 SNORA48 ACADVL BCL6B ELP5 NEURL4 GABARAP FGF11 EIF5A TNFSF12-TNFSF13 ACAP1 PLSCR3 CHRNB1 LOC107983988 FBXO39 TMEM256 CTDNEP1 SLC35G6 SOX15 SLC16A13 MIR497 DVL2 SNORA67 |
nsv574322 | Chr.17:7010333 - 7689462 on Build GRCh38 | Loss | SENP3-EIF4A1 TMEM102 C17orf74 PHF23 KCTD11 MIR195 ASGR2 TNK1 TNFSF13 SAT2 GPS2 TMEM256-PLSCR3 EIF4A1 SLC16A11 ALOX12-AS1 CLDN7 DLG4 SENP3 TNFSF12 LOC100996842 POLR2A RNASEK MIR324 FXR2 C17orf49 ATP1B2 RNASEK-C17orf49 TMEM95 YBX2 CLEC10A ASGR1 MIR497HG SNORD10 MPDU1 SHBG SPEM1 ZBTB4 CD68 NLGN2 SLC2A4 ALOX12 SNORA48 ACADVL BCL6B ELP5 NEURL4 GABARAP FGF11 EIF5A TNFSF12-TNFSF13 ACAP1 PLSCR3 CHRNB1 LOC107983988 TMEM256 CTDNEP1 SLC35G6 SOX15 SLC16A13 WRAP53 MIR497 TP53 DVL2 SNORA67 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |