Assay Details
Target Gene Details
Entrez Gene ID: | 83903 |
Gene Name: | germ cell associated 2, haspin |
Gene Aliases: |
HASPIN |
Location: |
Chr.17:3723903-3726699 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GSG2 | NM_031965.2 | 1 | 546 | NP_114171.2 |
AB039834.3 | 1 | 543 | ||
AF289865.1 | 1 | 542 | AAK30300.1 | |
AK056691.1 | 1 | 547 | BAB71255.1 | |
AK292715.1 | 1 | 532 | ||
AK310546.1 | 1 | 546 | ||
AK315247.1 | 1 | 546 | ||
BC016626.1 | 1 | 532 | ||
BC047457.1 | 1 | 527 | AAH47457.1 |
Target Gene Details
Entrez Gene ID: | 3682 |
Gene Name: | integrin subunit alpha E |
Gene Aliases: |
CD103, HUMINAE |
Location: |
Chr.17:3714625-3803766 on Build GRCh38 |
Assay Gene Location: | Within Intron 27 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
ITGAE | NM_002208.4 | NP_002199.3 | ||
XM_011523823.2 | XP_011522125.1 | |||
XM_011523825.2 | XP_011522127.1 | |||
XM_011523827.2 | XP_011522129.1 | |||
XM_011523828.2 | XP_011522130.1 | |||
XM_017024586.1 | XP_016880075.1 | |||
BC113436.1 | ||||
BC117207.1 | ||||
L25851.2 | AAB59359.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv574237 | Chr.17:3486822 - 3729542 on Build GRCh38 | Loss | TRPV3 ITGAE ASPA TRPV1 EMC6 TAX1BP3 GSG2 P2RX5 CTNS SPATA22 SHPK P2RX5-TAX1BP3 |
nsv1065489 | Chr.17:2631416 - 3948349 on Build GRCh38 | Gain | OR3A2 P2RX1 LOC101927911 OR1E1 PAFAH1B1 CCDC92B P2RX5-TAX1BP3 ITGAE OR1A1 CAMKK1 OR3A3 LOC105371592 P2RX5 SHPK OR1A2 OR1G1 OR3A4P OR1D2 NCBP3 TRPV1 OR1D4 SPATA22 TRPV3 ASPA MIR1253 MIR6776 RAP1GAP2 EMC6 CLUH OR3A1 TAX1BP3 GSG2 CTNS OR1E2 LOC105371591 OR1D5 ATP2A3 |
nsv469791 | Chr.17:3700760 - 3885899 on Build GRCh38 | Loss | ITGAE NCBP3 CAMKK1 GSG2 |
nsv1055740 | Chr.17:3381841 - 3890153 on Build GRCh38 | Gain | NCBP3 TRPV1 OR3A2 OR1E1 SPATA22 P2RX5-TAX1BP3 TRPV3 ITGAE ASPA CAMKK1 OR3A3 EMC6 TAX1BP3 GSG2 P2RX5 CTNS SHPK OR1E2 |
nsv833342 | Chr.17:3626188 - 3806082 on Build GRCh38 | Loss | ITGAE EMC6 TAX1BP3 GSG2 P2RX5 CTNS SHPK P2RX5-TAX1BP3 |
More Information
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |