Assay Details
Target Gene Details
Entrez Gene ID: | 5439 |
Gene Name: | RNA polymerase II subunit J |
Gene Aliases: |
POLR2J1, RPB11, RPB11A, RPB11m, hRPB14 |
Location: |
Chr.7:102473100-102478999 on Build GRCh38 |
Assay Gene Location: | Within Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
POLR2J | NM_006234.4 | 4 | 571 | NP_006225.1 |
XM_005250452.4 | XP_005250509.1 | |||
XM_017012353.1 | XP_016867842.1 | |||
AK290515.1 | ||||
BC024165.1 | AAH24165.1 | |||
BC065711.1 | 4 | 549 | AAH65711.1 | |
BC139902.1 | ||||
BC141830.1 | ||||
BM545237.1 | ||||
BM791979.1 | 2 | 223 | ||
L37127.1 | AAD05361.1 | |||
X82385.1 | CAA57785.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv831083 | Chr.7:102340560 - 102655422 on Build GRCh38 | Loss | MIR5090 RASA4 PRKRIP1 POLR2J POLR2J2 LRWD1 SPDYE6 SPDYE2B LOC107983993 LOC100289561 MIR4467 POLR2J3 ALKBH4 MIR548O SPDYE2 LOC100630923 UPK3BL LOC102724229 RASA4B ORAI2 |
nsv482111 | Chr.7:102473103 - 102478934 on Build GRCh38 | Gain | POLR2J LRWD1 |
dgv11541n54 | Chr.7:102473462 - 102646638 on Build GRCh38 | Loss | RASA4 LOC107983993 POLR2J3 POLR2J SPDYE2 UPK3BL LOC102724229 RASA4B POLR2J2 |
nsv8192 | Chr.7:102450605 - 102692752 on Build GRCh38 | Gain | MIR5090 RASA4 POLR2J POLR2J2 LRWD1 SPDYE2B LOC107983993 MIR4467 POLR2J3 ALKBH4 SPDYE2 UPK3BL LOC102724229 RASA4B ORAI2 |
esv27624 | Chr.7:102472919 - 102691417 on Build GRCh38 | Gain+Loss | SPDYE2B RASA4 LOC107983993 POLR2J3 POLR2J SPDYE2 UPK3BL LOC102724229 RASA4B POLR2J2 LRWD1 |
nsv428182 | Chr.7:102257460 - 102735503 on Build GRCh38 | Gain | MIR5090 RASA4 PRKRIP1 MIR4285 POLR2J CUX1 POLR2J2 LRWD1 SPDYE6 SPDYE2B LOC107983993 LOC100289561 MIR4467 POLR2J3 ALKBH4 MIR548O SPDYE2 FBXL13 LOC100630923 UPK3BL LOC102724229 RASA4B ORAI2 SH2B2 |
dgv6538n100 | Chr.7:102171110 - 103063688 on Build GRCh38 | Gain | RASA4 MIR4285 POLR2J CUX1 POLR2J2 LOC107983993 MIR4467 POLR2J3 SPDYE2 LOC100630923 RASA4B ORAI2 MIR5090 PRKRIP1 LRWD1 SPDYE6 SPDYE2B LOC100289561 FAM185A ALKBH4 LRRC17 MIR548O FBXL13 UPK3BL NFE4 LOC102724229 SH2B2 |
nsv607998 | Chr.7:102385213 - 102473462 on Build GRCh38 | Gain+Loss | MIR5090 PRKRIP1 MIR4467 ALKBH4 POLR2J MIR548O LOC100630923 ORAI2 LRWD1 |
nsv5879 | Chr.7:102450321 - 102747356 on Build GRCh38 | Deletion | MIR5090 RASA4 POLR2J POLR2J2 LRWD1 SPDYE2B LOC107983993 MIR4467 POLR2J3 ALKBH4 SPDYE2 FBXL13 UPK3BL LOC102724229 RASA4B ORAI2 |
nsv607999 | Chr.7:102451288 - 102473452 on Build GRCh38 | Loss | MIR5090 MIR4467 ALKBH4 POLR2J ORAI2 LRWD1 |
More Information
Additional Information:
For this assay, SNP(s) [rs576255328] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |