Assay Details
Target Gene Details
Entrez Gene ID: | 83903 |
Gene Name: | germ cell associated 2, haspin |
Gene Aliases: |
HASPIN |
Location: |
Chr.17:3723903-3726699 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GSG2 | NM_031965.2 | 1 | 1063 | NP_114171.2 |
AB039834.3 | 1 | 1060 | ||
AF289865.1 | 1 | 1059 | AAK30300.1 | |
AK056691.1 | BAB71255.1 | |||
AK292715.1 | 1 | 1049 | ||
AK310546.1 | 1 | 1063 | ||
AK315247.1 | 1 | 1063 | ||
BC016626.1 | 1 | 1049 | ||
BC047457.1 | 1 | 1044 | AAH47457.1 |
Target Gene Details
Entrez Gene ID: | 3682 |
Gene Name: | integrin subunit alpha E |
Gene Aliases: |
CD103, HUMINAE |
Location: |
Chr.17:3714625-3803766 on Build GRCh38 |
Assay Gene Location: | Within Intron 27 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
ITGAE | NM_002208.4 | NP_002199.3 | ||
XM_011523823.2 | XP_011522125.1 | |||
XM_011523825.2 | XP_011522127.1 | |||
XM_011523827.2 | XP_011522129.1 | |||
XM_011523828.2 | XP_011522130.1 | |||
XM_017024586.1 | XP_016880075.1 | |||
BC113436.1 | ||||
BC117207.1 | ||||
L25851.2 | AAB59359.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv574237 | Chr.17:3486822 - 3729542 on Build GRCh38 | Loss | ASPA P2RX5 P2RX5-TAX1BP3 EMC6 TRPV1 TRPV3 SHPK ITGAE SPATA22 TAX1BP3 GSG2 CTNS |
nsv1065489 | Chr.17:2631416 - 3948349 on Build GRCh38 | Gain | LOC101927911 CLUH ATP2A3 OR1A1 OR1G1 CCDC92B ITGAE OR1D5 OR3A2 GSG2 MIR6776 PAFAH1B1 OR1D2 OR1E2 TRPV3 SHPK LOC105371591 OR1D4 MIR1253 OR3A3 ASPA SPATA22 TAX1BP3 OR3A1 CTNS LOC105371592 OR3A4P P2RX1 OR1A2 CAMKK1 P2RX5 P2RX5-TAX1BP3 EMC6 NCBP3 RAP1GAP2 TRPV1 OR1E1 |
nsv469791 | Chr.17:3700760 - 3885899 on Build GRCh38 | Loss | CAMKK1 NCBP3 ITGAE GSG2 |
nsv1055740 | Chr.17:3381841 - 3890153 on Build GRCh38 | Gain | OR3A3 ASPA ITGAE SPATA22 TAX1BP3 OR3A2 GSG2 CTNS CAMKK1 P2RX5 P2RX5-TAX1BP3 EMC6 NCBP3 OR1E2 TRPV1 TRPV3 SHPK OR1E1 |
nsv833342 | Chr.17:3626188 - 3806082 on Build GRCh38 | Loss | P2RX5 P2RX5-TAX1BP3 EMC6 SHPK ITGAE TAX1BP3 GSG2 CTNS |
More Information
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |