Assay Details
Target Gene Details
Entrez Gene ID: | 1068 |
Gene Name: | centrin 1 |
Gene Aliases: |
CEN1, CETN |
Location: |
Chr.18:580343-582020 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
CETN1 | NM_004066.2 | 1 | 1022 | NP_004057.1 |
BC029515.1 | 1 | 1008 | AAH29515.1 | |
U03270.1 | 1 | 998 | AAC27343.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv576236 | Chr.18:319176 - 794272 on Build GRCh38 | Gain | LOC105376854 COLEC12 YES1 CETN1 ENOSF1 CLUL1 TYMSOS TYMS |
nsv576239 | Chr.18:394946 - 712037 on Build GRCh38 | Gain | LOC105376854 COLEC12 CETN1 ENOSF1 CLUL1 TYMSOS TYMS |
dgv5810n54 | Chr.18:351004 - 2238246 on Build GRCh38 | Gain | LOC105376854 COLEC12 YES1 CETN1 ENOSF1 LOC388456 LINC00470 CLUL1 TYMSOS ADCYAP1 TYMS |
nsv576242 | Chr.18:567127 - 841320 on Build GRCh38 | Gain | YES1 CETN1 ENOSF1 CLUL1 TYMSOS TYMS |
esv3641497 | Chr.18:551569 - 745897 on Build GRCh38 | Gain | YES1 CETN1 ENOSF1 CLUL1 TYMSOS TYMS |
nsv528169 | Chr.18:551688 - 2240220 on Build GRCh38 | Loss | YES1 CETN1 ENOSF1 LOC388456 LINC00470 CLUL1 TYMSOS ADCYAP1 TYMS |
dgv3307n100 | Chr.18:469797 - 683607 on Build GRCh38 | Gain | LOC105376854 COLEC12 CETN1 ENOSF1 CLUL1 TYMSOS TYMS |
nsv1060188 | Chr.18:575087 - 863351 on Build GRCh38 | Gain | YES1 CETN1 ENOSF1 CLUL1 TYMSOS TYMS |
nsv833577 | Chr.18:521331 - 725019 on Build GRCh38 | Gain+Loss | YES1 CETN1 ENOSF1 CLUL1 TYMSOS TYMS |
esv3893055 | Chr.18:415105 - 743226 on Build GRCh38 | Gain | LOC105376854 COLEC12 YES1 CETN1 ENOSF1 CLUL1 TYMSOS TYMS |
nsv482935 | Chr.18:10001 - 2900002 on Build GRCh38 | Loss | COLEC12 YES1 CETN1 NDC80 USP14 EMILIN2 LOC388456 LINC00470 CLUL1 TYMSOS ADCYAP1 ROCK1P1 CBX3P2 TYMS LOC101926997 LOC105376854 METTL4 ENOSF1 SMCHD1 MIR8078 THOC1 |
nsv576228 | Chr.18:69836 - 1506323 on Build GRCh38 | Loss | COLEC12 YES1 CETN1 USP14 LOC388456 LINC00470 CLUL1 TYMSOS ADCYAP1 ROCK1P1 TYMS LOC105376854 ENOSF1 MIR8078 THOC1 |
More Information
Additional Information:
For this assay, SNP(s) [rs111457289,rs113711943] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |