Assay Details
Target Gene Details
Entrez Gene ID: | 83903 |
Gene Name: | germ cell associated 2, haspin |
Gene Aliases: |
HASPIN |
Location: |
Chr.17:3723903-3726699 on Build GRCh38 |
Assay Gene Location: | Overlaps - Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GSG2 | NM_031965.2 | NP_114171.2 | ||
AB039834.3 | ||||
AF289865.1 | AAK30300.1 | |||
AK056691.1 | BAB71255.1 | |||
AK292715.1 | ||||
AK310546.1 | ||||
AK315247.1 | ||||
BC016626.1 | ||||
BC047457.1 | AAH47457.1 |
Target Gene Details
Entrez Gene ID: | 3682 |
Gene Name: | integrin subunit alpha E |
Gene Aliases: |
CD103, HUMINAE |
Location: |
Chr.17:3714625-3803766 on Build GRCh38 |
Assay Gene Location: | Within Intron 27 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
ITGAE | NM_002208.4 | NP_002199.3 | ||
XM_011523823.2 | XP_011522125.1 | |||
XM_011523825.2 | XP_011522127.1 | |||
XM_011523827.2 | XP_011522129.1 | |||
XM_011523828.2 | XP_011522130.1 | |||
XM_017024586.1 | XP_016880075.1 | |||
BC113436.1 | ||||
BC117207.1 | ||||
L25851.2 | AAB59359.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv574237 | Chr.17:3486822 - 3729542 on Build GRCh38 | Loss | EMC6 P2RX5-TAX1BP3 TRPV3 SHPK P2RX5 ITGAE SPATA22 TRPV1 GSG2 CTNS ASPA TAX1BP3 |
nsv1065489 | Chr.17:2631416 - 3948349 on Build GRCh38 | Gain | LOC105371591 LOC105371592 P2RX5-TAX1BP3 OR1E1 MIR6776 LOC101927911 OR3A3 ASPA CCDC92B CAMKK1 OR1E2 OR1G1 P2RX5 OR1D2 ATP2A3 OR3A4P OR1D4 OR1A2 TRPV1 GSG2 CTNS OR3A2 OR1A1 PAFAH1B1 TRPV3 SHPK SPATA22 OR1D5 EMC6 CLUH P2RX1 ITGAE RAP1GAP2 NCBP3 OR3A1 MIR1253 TAX1BP3 |
nsv469791 | Chr.17:3700760 - 3885899 on Build GRCh38 | Loss | ITGAE NCBP3 GSG2 CAMKK1 |
nsv1055740 | Chr.17:3381841 - 3890153 on Build GRCh38 | Gain | P2RX5-TAX1BP3 TRPV3 SHPK OR1E1 SPATA22 OR3A3 ASPA CAMKK1 OR1E2 EMC6 P2RX5 ITGAE NCBP3 TRPV1 GSG2 CTNS OR3A2 TAX1BP3 |
nsv833342 | Chr.17:3626188 - 3806082 on Build GRCh38 | Loss | EMC6 P2RX5-TAX1BP3 SHPK P2RX5 ITGAE GSG2 CTNS TAX1BP3 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |