Assay Details
Target Gene Details
Entrez Gene ID: | 1973 |
Gene Name: | eukaryotic translation initiation factor 4A1 |
Gene Aliases: |
DDX2A, EIF-4A, EIF4A, eIF-4A-I, eIF4A-I |
Location: |
Chr.17:7572706-7579006 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 6 - Exon 7 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
EIF4A1 | NM_001204510.1 | NP_001191439.1 | ||
NM_001416.3 | NP_001407.1 | |||
AK130082.1 | ||||
AK289453.1 | ||||
AK291971.1 | ||||
AK296664.1 | ||||
AK297916.1 | ||||
AK303222.1 | ||||
AK309274.1 | ||||
AK312630.1 | ||||
BC009585.1 | AAH09585.1 | |||
BC073752.1 | AAH73752.1 | |||
BT019880.1 | AAV38683.1 | |||
BT019881.1 | AAV38684.1 | |||
D13748.1 | BAA02897.1 |
Target Gene Details
Entrez Gene ID: | 100533955 |
Gene Name: | SENP3-EIF4A1 readthrough (NMD candidate) |
Gene Aliases: |
- |
Location: |
Chr.17:7561992-7579006 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 17 - Exon 18 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3-EIF4A1 | NR_037926.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422288 | Chr.17:6789933 - 7646709 on Build GRCh38 | Deletion | MIR497 SPEM1 KCTD11 FXR2 DLG4 TNK1 TMEM95 FGF11 ALOX12P2 SHBG TMEM102 ALOX12 SNORA48 PLSCR3 MPDU1 ELP5 CTDNEP1 SOX15 C17orf49 SLC35G6 MIR324 LOC100996842 SLC2A4 ZBTB4 MIR497HG TNFSF12 DVL2 CLEC10A GPS2 TNFSF13 LOC107983988 GABARAP MIR195 TNFSF12-TNFSF13 RNASEK ALOX12-AS1 ACAP1 ASGR2 PHF23 SLC16A11 YBX2 TEKT1 SENP3-EIF4A1 ACADVL CHRNB1 EIF4A1 NLGN2 TMEM256 CLDN7 SAT2 ASGR1 FBXO39 SNORA67 TMEM256-PLSCR3 POLR2A NEURL4 SENP3 EIF5A CD68 SNORD10 BCL6B ATP1B2 C17orf74 RNASEK-C17orf49 SLC16A13 |
nsv960401 | Chr.17:7577078 - 7578770 on Build GRCh38 | Duplication | SENP3-EIF4A1 SNORA67 EIF4A1 |
nsv574322 | Chr.17:7010333 - 7689462 on Build GRCh38 | Loss | MIR497 SPEM1 KCTD11 FXR2 DLG4 TNK1 TMEM95 FGF11 SHBG TMEM102 ALOX12 SNORA48 PLSCR3 MPDU1 ELP5 CTDNEP1 TP53 SOX15 C17orf49 SLC35G6 MIR324 LOC100996842 SLC2A4 ZBTB4 MIR497HG WRAP53 TNFSF12 DVL2 CLEC10A GPS2 TNFSF13 LOC107983988 GABARAP MIR195 TNFSF12-TNFSF13 RNASEK ALOX12-AS1 ACAP1 ASGR2 PHF23 SLC16A11 YBX2 SENP3-EIF4A1 ACADVL CHRNB1 EIF4A1 NLGN2 TMEM256 CLDN7 SAT2 ASGR1 SNORA67 TMEM256-PLSCR3 POLR2A NEURL4 SENP3 EIF5A CD68 SNORD10 BCL6B ATP1B2 C17orf74 RNASEK-C17orf49 SLC16A13 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |