Assay Details
Target Gene Details
Entrez Gene ID: | 89801 |
Gene Name: | protein phosphatase 1 regulatory subunit 3F |
Gene Aliases: |
HB2E, LL0XNC01-7P3.1, R3F |
Location: |
Chr.X:49269822-49301465 on Build GRCh38 |
Assay Gene Location: | Overlaps Exon 1 - Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PPP1R3F | NM_001184745.1 | NP_001171674.1 | ||
NM_033215.4 | NP_149992.3 | |||
XM_005272687.3 | XP_005272744.1 | |||
XM_017029934.1 | XP_016885423.1 | |||
XM_017029935.1 | XP_016885424.1 | |||
AK056909.1 | ||||
AK303738.1 | ||||
BC131588.1 | ||||
DC412626.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv471602 | Chr.X:49205142 - 49320261 on Build GRCh38 | Gain | CACNA1F CCDC22 GAGE10 PPP1R3F FOXP3 |
nsv528292 | Chr.X:48433286 - 49274368 on Build GRCh38 | Gain | TBC1D25 EBP WDR45 CCDC22 ERAS PORCN TIMM17B PQBP1 PPP1R3F OTUD5 FTSJ1 GATA1 CCDC120 GPKOW GLOD5 HDAC6 SYP-AS1 KCND1 PIM2 WAS PRICKLE3 PRAF2 FOXP3 TFE3 SLC35A2 RBM3 GRIPAP1 PLP2 SYP SUV39H1 MAGIX WDR13 PCSK1N SLC38A5 CACNA1F LOC101927635 |
esv32909 | Chr.X:48003374 - 49285646 on Build GRCh38 | Gain+Loss | TBC1D25 SPACA5 EBP SSX4B WDR45 CCDC22 ERAS PORCN TIMM17B SSX3 PQBP1 PPP1R3F ZNF630-AS1 OTUD5 FTSJ1 GATA1 CCDC120 ZNF630 SSX9 GPKOW GLOD5 HDAC6 SYP-AS1 SSX1 KCND1 PIM2 WAS PRICKLE3 PRAF2 FOXP3 TFE3 SLC35A2 RBM3 GRIPAP1 PLP2 SYP SSX4 SPACA5B SUV39H1 MAGIX WDR13 PCSK1N SLC38A5 ZNF182 SSX5 CACNA1F SSX6 LOC101927635 |
nsv469734 | Chr.X:49205141 - 49320261 on Build GRCh38 | Gain+Loss | CACNA1F CCDC22 GAGE10 PPP1R3F FOXP3 |
More Information
Additional Information:
For this assay, SNP(s) [rs73498100] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Non-exonic DGV Variation |