Assay Details
Target Gene Details
Entrez Gene ID: | 89801 |
Gene Name: | protein phosphatase 1 regulatory subunit 3F |
Gene Aliases: |
HB2E, LL0XNC01-7P3.1, R3F |
Location: |
Chr.X:49269822-49301465 on Build GRCh38 |
Assay Gene Location: | Overlaps Exon 1 - Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PPP1R3F | NM_001184745.1 | NP_001171674.1 | ||
NM_033215.4 | NP_149992.3 | |||
XM_005272687.3 | XP_005272744.1 | |||
XM_017029934.1 | XP_016885423.1 | |||
XM_017029935.1 | XP_016885424.1 | |||
AK056909.1 | ||||
AK303738.1 | ||||
BC131588.1 | ||||
DC412626.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv471602 | Chr.X:49205142 - 49320261 on Build GRCh38 | Gain | PPP1R3F FOXP3 CACNA1F GAGE10 CCDC22 |
nsv528292 | Chr.X:48433286 - 49274368 on Build GRCh38 | Gain | PORCN PPP1R3F SUV39H1 CCDC120 SLC35A2 PRAF2 FOXP3 RBM3 FTSJ1 SLC38A5 HDAC6 KCND1 PRICKLE3 ERAS GRIPAP1 TFE3 TBC1D25 PQBP1 LOC101927635 SYP-AS1 PIM2 GPKOW WDR13 PCSK1N CACNA1F GLOD5 WDR45 PLP2 MAGIX TIMM17B EBP SYP GATA1 WAS CCDC22 OTUD5 |
esv32909 | Chr.X:48003374 - 49285646 on Build GRCh38 | Gain+Loss | PORCN PPP1R3F SUV39H1 CCDC120 SLC35A2 PRAF2 FOXP3 RBM3 FTSJ1 SLC38A5 SPACA5B HDAC6 KCND1 ZNF630-AS1 PRICKLE3 ERAS GRIPAP1 TFE3 TBC1D25 PQBP1 SSX4 LOC101927635 SYP-AS1 PIM2 GPKOW WDR13 SSX4B SSX3 PCSK1N CACNA1F GLOD5 WDR45 PLP2 MAGIX SPACA5 SSX5 ZNF182 TIMM17B EBP SSX1 SYP SSX6 GATA1 SSX9 WAS CCDC22 ZNF630 OTUD5 |
nsv469734 | Chr.X:49205141 - 49320261 on Build GRCh38 | Gain+Loss | PPP1R3F FOXP3 CACNA1F GAGE10 CCDC22 |
More Information
Additional Information:
For this assay, SNP(s) [rs73498100] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Non-exonic DGV Variation |