Assay Details
Target Gene Details
Entrez Gene ID: | 286223 |
Gene Name: | chromosome 9 open reading frame 47 |
Gene Aliases: |
C9orf108, bA791O21.3 |
Location: |
Chr.9:88990863-88996142 on Build GRCh38 |
Assay Gene Location: | Within Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
C9orf47 | NM_001001938.3 | 3 | 2323 | NP_001001938.1 |
NM_001142413.1 | 3 | 2266 | NP_001135885.1 | |
AK127854.1 | 3 | 2259 | BAC87162.1 | |
BC136895.1 | 3 | 2156 | ||
BC144432.1 | 3 | 2157 |
Target Gene Details
Entrez Gene ID: | 1903 |
Gene Name: | sphingosine-1-phosphate receptor 3 |
Gene Aliases: |
EDG-3, EDG3, LPB3, S1P3 |
Location: |
Chr.9:88991409-89005155 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
S1PR3 | NM_005226.3 | NP_005217.2 | ||
AK312798.1 | ||||
BC060827.1 | AAH60827.1 | |||
DA722994.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv3621014 | Chr.9:88877891 - 89641453 on Build GRCh38 | Gain | SHC3 GADD45G C9orf47 SEMA4D CKS2 SECISBP2 UNQ6494 S1PR3 MIR3153 |
esv29340 | Chr.9:88907171 - 89010602 on Build GRCh38 | Gain+Loss | SHC3 C9orf47 S1PR3 |
More Information
Additional Information:
For this assay, SNP(s) [rs79303380] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |