Assay Details
Target Gene Details
Entrez Gene ID: | 100533107 |
Gene Name: | RTEL1-TNFRSF6B readthrough (NMD candidate) |
Gene Aliases: |
- |
Location: |
Chr.20:63657810-63698698 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 37 - Exon 38 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
RTEL1-TNFRSF6B | NR_037882.1 |
Target Gene Details
Entrez Gene ID: | 8771 |
Gene Name: | TNF receptor superfamily member 6b |
Gene Aliases: |
DCR3, DJ583P15.1.1, M68, M68E, TR6 |
Location: |
Chr.20:63696651-63698698 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 2 - Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TNFRSF6B | NM_003823.3 | NP_003814.1 | ||
AF104419.1 | AAD03056.1 | |||
AF134240.1 | AAD29688.1 | |||
AF217794.1 | AAF33686.1 | |||
AW204999.1 | ||||
AY124378.1 | AAM94172.1 | |||
AY124379.1 | AAM94173.1 | |||
AY358279.1 | AAQ88646.1 | |||
BC017065.1 | AAH17065.1 | |||
BC034349.1 | AAH34349.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
dgv7676n54 | Chr.20:63686867 - 63702868 on Build GRCh38 | Loss | RTEL1-TNFRSF6B RTEL1 TNFRSF6B ARFRP1 |
nsv953308 | Chr.20:63650148 - 63831847 on Build GRCh38 | Deletion | RTEL1-TNFRSF6B ZGPAT RTEL1 SLC2A4RG LIME1 TNFRSF6B STMN3 ARFRP1 ZBTB46 ZBTB46-AS1 |
nsv1160690 | Chr.20:63639552 - 63744287 on Build GRCh38 | Deletion | RTEL1-TNFRSF6B ZGPAT RTEL1 SLC2A4RG LIME1 TNFRSF6B STMN3 ARFRP1 ZBTB46 |
nsv428381 | Chr.20:63583375 - 64334167 on Build GRCh38 | Gain+Loss | SAMD10 ZGPAT MIR941-1 LOC100505771 PRPF6 MIR941-3 STMN3 ARFRP1 OPRL1 ZBTB46-AS1 UCKL1 C20orf181 MIR941-2 TPD52L2 RTEL1 MIR941-5 MIR1914 SLC2A4RG UCKL1-AS1 GMEB2 MIR6813 PCMTD2 MYT1 RTEL1-TNFRSF6B SOX18 MIR647 LINC00266-1 RGS19 NPBWR2 LIME1 LINC00176 MIR941-4 ZNF512B ZBTB46 LKAAEAR1 ABHD16B DNAJC5 TCEA2 TNFRSF6B |
nsv586611 | Chr.20:63680946 - 63709340 on Build GRCh38 | Loss | RTEL1-TNFRSF6B ZGPAT RTEL1 TNFRSF6B ARFRP1 |
nsv470563 | Chr.20:63486715 - 63793308 on Build GRCh38 | Loss | RTEL1-TNFRSF6B ZGPAT LOC100505771 LIME1 STMN3 EEF1A2 ARFRP1 ZBTB46 SRMS HELZ2 FNDC11 RTEL1 SLC2A4RG PTK6 PPDPF GMEB2 TNFRSF6B |
esv2758806 | Chr.20:63470996 - 63745014 on Build GRCh38 | Gain+Loss | RTEL1-TNFRSF6B ZGPAT LOC100505771 LIME1 KCNQ2 STMN3 EEF1A2 ARFRP1 ZBTB46 SRMS HELZ2 FNDC11 RTEL1 SLC2A4RG PTK6 PPDPF GMEB2 TNFRSF6B |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |