Assay Details
Target Gene Details
Entrez Gene ID: | 5338 |
Gene Name: | phospholipase D2 |
Gene Aliases: |
- |
Location: |
Chr.17:4807101-4823432 on Build GRCh38 |
Assay Gene Location: | Overlaps Exon 19 - Intron 19 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PLD2 | NM_001243108.1 | NP_001230037.1 | ||
NM_002663.4 | NP_002654.3 | |||
XM_005256696.2 | XP_005256753.1 | |||
XM_017024764.1 | XP_016880253.1 | |||
AB209374.1 | BAD92611.1 | |||
AF033850.1 | AAD04197.1 | |||
AF035483.1 | AAC24498.1 | |||
AF038440.1 | AAB96655.1 | |||
AF038441.1 | AAB96656.1 | |||
AK304246.1 | ||||
AK314797.1 | ||||
AY178289.1 | AAO21120.1 | |||
BC015033.1 | AAH15033.1 | |||
BC056871.1 | AAH56871.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv833347 | Chr.17:4785297 - 4955981 on Build GRCh38 | Loss | PFN1 GLTPD2 VMO1 SLC25A11 LOC107984973 ENO3 C17orf107 CHRNE PLD2 RNF167 MINK1 PSMB6 GP1BA |
esv3639795 | Chr.17:4812578 - 4820832 on Build GRCh38 | Loss | PLD2 |
nsv574273 | Chr.17:4585589 - 5460332 on Build GRCh38 | Gain | VMO1 ALOX15 LOC107984973 SPAG7 NUP88 DHX33 ZMYND15 SLC52A1 RABEP1 USP6 ZFP3 LOC101927979 SMTNL2 ARRB2 LOC101559451 LOC400568 PFN1 GLTPD2 SCIMP SLC25A11 ENO3 INCA1 KIF1C C1QBP LOC100130950 ZNF232 MIR6865 RPAIN MED11 TM4SF5 CAMTA2 PELP1 C17orf107 LOC102724009 CXCL16 CHRNE LOC101928000 PLD2 RNF167 MIR6864 ZNF594 MINK1 PSMB6 GP1BA |
nsv833346 | Chr.17:4646256 - 4860871 on Build GRCh38 | Loss | LOC101559451 GLTPD2 VMO1 LOC107984973 MED11 TM4SF5 PELP1 ZMYND15 CXCL16 PLD2 MINK1 PSMB6 ARRB2 |
More Information
Additional Information:
For this assay, SNP(s) [rs116578456] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Non-exonic DGV Variation |