Assay Details
Target Gene Details
Entrez Gene ID: | 1973 |
Gene Name: | eukaryotic translation initiation factor 4A1 |
Gene Aliases: |
DDX2A, EIF-4A, EIF4A, eIF-4A-I, eIF4A-I |
Location: |
Chr.17:7572706-7579006 on Build GRCh38 |
Assay Gene Location: | Overlaps Exon 2 - Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
EIF4A1 | NM_001204510.1 | NP_001191439.1 | ||
NM_001416.3 | NP_001407.1 | |||
AK130082.1 | ||||
AK289453.1 | ||||
AK291971.1 | ||||
AK296664.1 | ||||
AK297916.1 | ||||
AK303222.1 | ||||
AK303599.1 | ||||
AK309274.1 | ||||
AK312630.1 | ||||
BC009585.1 | AAH09585.1 | |||
BC073752.1 | AAH73752.1 | |||
BG284868.1 | ||||
BT019880.1 | AAV38683.1 | |||
BT019881.1 | AAV38684.1 | |||
D13748.1 | BAA02897.1 |
Target Gene Details
Entrez Gene ID: | 100533955 |
Gene Name: | SENP3-EIF4A1 readthrough (NMD candidate) |
Gene Aliases: |
- |
Location: |
Chr.17:7561992-7579006 on Build GRCh38 |
Assay Gene Location: | Overlaps Exon 13 - Intron 13 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3-EIF4A1 | NR_037926.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422288 | Chr.17:6789933 - 7646709 on Build GRCh38 | Deletion | LOC107983988 ZBTB4 SENP3 CLDN7 ASGR2 ASGR1 CHRNB1 MIR497 CD68 NEURL4 PLSCR3 FGF11 ACADVL SNORA48 SOX15 GPS2 TNK1 DLG4 SHBG ELP5 SLC2A4 RNASEK TMEM256 CLEC10A GABARAP ALOX12 EIF4A1 SNORD10 SLC16A13 TNFSF12-TNFSF13 TNFSF13 ALOX12P2 BCL6B FXR2 YBX2 SNORA67 ACAP1 POLR2A TMEM256-PLSCR3 SPEM1 SAT2 ATP1B2 ALOX12-AS1 LOC100996842 KCTD11 NLGN2 MIR497HG C17orf49 MPDU1 RNASEK-C17orf49 FBXO39 SLC16A11 PHF23 DVL2 SLC35G6 TMEM102 SENP3-EIF4A1 EIF5A C17orf74 CTDNEP1 MIR195 MIR324 TEKT1 TNFSF12 TMEM95 |
nsv574322 | Chr.17:7010333 - 7689462 on Build GRCh38 | Loss | LOC107983988 ZBTB4 SENP3 CLDN7 ASGR2 ASGR1 CHRNB1 MIR497 CD68 NEURL4 PLSCR3 FGF11 ACADVL SNORA48 SOX15 GPS2 TNK1 DLG4 SHBG ELP5 SLC2A4 RNASEK TMEM256 CLEC10A GABARAP ALOX12 EIF4A1 SNORD10 SLC16A13 TNFSF12-TNFSF13 TNFSF13 BCL6B WRAP53 FXR2 YBX2 SNORA67 ACAP1 POLR2A TMEM256-PLSCR3 SPEM1 SAT2 TP53 ATP1B2 ALOX12-AS1 LOC100996842 KCTD11 NLGN2 MIR497HG C17orf49 MPDU1 RNASEK-C17orf49 SLC16A11 PHF23 DVL2 SLC35G6 TMEM102 SENP3-EIF4A1 EIF5A C17orf74 CTDNEP1 MIR195 MIR324 TNFSF12 TMEM95 |
nsv960400 | Chr.17:7574339 - 7575434 on Build GRCh38 | Duplication | SENP3-EIF4A1 SNORA48 EIF4A1 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |