Assay Details
Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 1 - Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
NM_001288792.1 | NP_001275721.1 | |||
NM_001288793.1 | NP_001275722.1 | |||
NM_198481.3 | NP_940883.2 | |||
NR_110142.1 | ||||
XM_011526845.1 | XP_011525147.1 | |||
XM_011526846.1 | XP_011525148.1 | |||
XM_011526847.1 | XP_011525149.1 | |||
XM_011526848.1 | XP_011525150.1 | |||
XM_011526849.1 | XP_011525151.1 | |||
XM_017026666.1 | XP_016882155.1 | |||
AY358542.1 | AAQ88906.1 | |||
BC100943.2 | AAI00944.1 | |||
DQ479397.1 | ||||
FJ584316.1 | ||||
FJ584317.1 | ||||
FJ584318.1 | ||||
FJ584319.1 | ||||
FJ584320.1 | ||||
FJ882051.1 | ||||
FN398145.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion | PRPF31 NDUFA3 OSCAR VSTM1 TARM1 TFPT |
nsv580110 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain | MIR935 CACNG6 CACNG8 VSTM1 TARM1 |
nsv2542 | Chr.19:54050737 - 54097924 on Build GRCh38 | Deletion | OSCAR VSTM1 TARM1 |
nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain | MIR935 CACNG6 CACNG7 CACNG8 VSTM1 |
esv3644780 | Chr.19:54057724 - 54066399 on Build GRCh38 | Gain | VSTM1 |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | FAM90A27P MIR526B MIR519A2 MIR520B LOC105372457 ZNF331 MIR521-2 MIR518B LILRA6 MIR517C VN1R4 MIR515-2 MIR520H MIR373 LILRB2 MIR512-2 ZNF813 ZNF765 ZNF818P MIR518F MIR518C MIR512-1 MIR526A2 MIR519E MIR515-1 MIR518A2 MIR372 LILRB5 MIR520D MIR520A LILRA5 TFPT MIR519D MIR520F TMC4 MIR526A1 MIR935 PRPF31 MIR520E VN1R2 MIR527 MIR520G MIR4752 MIR519B MIR518A1 MIR1283-2 ZNF525 MIR371B MIR524 CACNG6 NDUFA3 MIR498 OSCAR MIR518D CACNG8 VSTM1 ZNF677 MIR516B2 MIR520C RPS9 MIR371A LENG1 LILRB3 MIR519A1 MBOAT7 TSEN34 TARM1 BIRC8 MIR518E MIR516A1 LOC284379 NLRP12 MIR522 CACNG7 PRKCG MIR517B MIR521-1 MIR517A MYADM MIR1283-1 MIR523 MIR516A2 MIR519C MIR525 CNOT3 ZNF761 MIR516B1 ZNF665 TPM3P9 DPRX MIR1323 ZNF845 |
nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss | MIR935 PRPF31 CACNG6 NDUFA3 OSCAR CACNG8 VSTM1 TARM1 TFPT |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |