Assay Details
Target Gene Details
Entrez Gene ID: | 83903 |
Gene Name: | germ cell associated 2, haspin |
Gene Aliases: |
HASPIN |
Location: |
Chr.17:3723903-3726699 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GSG2 | NM_031965.2 | 1 | 1731 | NP_114171.2 |
AB039834.3 | 1 | 1728 | ||
AF289865.1 | 1 | 1727 | AAK30300.1 | |
AK056691.1 | BAB71255.1 | |||
AK292715.1 | 1 | 1717 | ||
AK310546.1 | 1 | 1731 | ||
AK315247.1 | 1 | 1731 | ||
BC016626.1 | 1 | 1717 | ||
BC047457.1 | 1 | 1712 | AAH47457.1 |
Target Gene Details
Entrez Gene ID: | 3682 |
Gene Name: | integrin subunit alpha E |
Gene Aliases: |
CD103, HUMINAE |
Location: |
Chr.17:3714625-3803766 on Build GRCh38 |
Assay Gene Location: | Within Intron 27 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
ITGAE | NM_002208.4 | NP_002199.3 | ||
XM_011523823.2 | XP_011522125.1 | |||
XM_011523825.2 | XP_011522127.1 | |||
XM_011523827.2 | XP_011522129.1 | |||
XM_011523828.2 | XP_011522130.1 | |||
XM_017024586.1 | XP_016880075.1 | |||
BC113436.1 | ||||
BC117207.1 | ||||
L25851.2 | AAB59359.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv574237 | Chr.17:3486822 - 3729542 on Build GRCh38 | Loss | GSG2 TRPV1 P2RX5 ITGAE SPATA22 ASPA P2RX5-TAX1BP3 SHPK TRPV3 EMC6 TAX1BP3 CTNS |
nsv1065489 | Chr.17:2631416 - 3948349 on Build GRCh38 | Gain | LOC105371591 OR1E1 P2RX5 P2RX5-TAX1BP3 EMC6 TAX1BP3 ATP2A3 OR1D4 RAP1GAP2 OR1D5 OR1G1 GSG2 CLUH OR1A1 OR3A2 SPATA22 ASPA SHPK TRPV3 MIR6776 OR1D2 MIR1253 TRPV1 LOC105371592 PAFAH1B1 OR3A4P LOC101927911 OR1E2 OR3A3 OR3A1 P2RX1 CCDC92B OR1A2 CAMKK1 ITGAE NCBP3 CTNS |
nsv469791 | Chr.17:3700760 - 3885899 on Build GRCh38 | Loss | CAMKK1 GSG2 ITGAE NCBP3 |
nsv1055740 | Chr.17:3381841 - 3890153 on Build GRCh38 | Gain | OR1E1 TRPV1 P2RX5 P2RX5-TAX1BP3 OR1E2 OR3A3 EMC6 TAX1BP3 CAMKK1 GSG2 OR3A2 ITGAE SPATA22 ASPA SHPK TRPV3 NCBP3 CTNS |
nsv833342 | Chr.17:3626188 - 3806082 on Build GRCh38 | Loss | GSG2 P2RX5 ITGAE P2RX5-TAX1BP3 SHPK EMC6 TAX1BP3 CTNS |
More Information
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |