Assay Details
Target Gene Details
Entrez Gene ID: | 83903 |
Gene Name: | germ cell associated 2, haspin |
Gene Aliases: |
HASPIN |
Location: |
Chr.17:3723903-3726699 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GSG2 | NM_031965.2 | 1 | 2001 | NP_114171.2 |
AB039834.3 | 1 | 1998 | ||
AF289865.1 | 1 | 1997 | AAK30300.1 | |
AK056691.1 | BAB71255.1 | |||
AK292715.1 | 1 | 1987 | ||
AK310546.1 | ||||
AK315247.1 | 1 | 2001 | ||
BC016626.1 | 1 | 1987 | ||
BC047457.1 | 1 | 1982 | AAH47457.1 |
Target Gene Details
Entrez Gene ID: | 3682 |
Gene Name: | integrin subunit alpha E |
Gene Aliases: |
CD103, HUMINAE |
Location: |
Chr.17:3714625-3803766 on Build GRCh38 |
Assay Gene Location: | Within Intron 27 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
ITGAE | NM_002208.4 | NP_002199.3 | ||
XM_011523823.2 | XP_011522125.1 | |||
XM_011523825.2 | XP_011522127.1 | |||
XM_011523827.2 | XP_011522129.1 | |||
XM_011523828.2 | XP_011522130.1 | |||
XM_017024586.1 | XP_016880075.1 | |||
BC113436.1 | ||||
BC117207.1 | ||||
L25851.2 | AAB59359.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv574237 | Chr.17:3486822 - 3729542 on Build GRCh38 | Loss | ITGAE P2RX5 CTNS GSG2 SPATA22 TAX1BP3 P2RX5-TAX1BP3 SHPK EMC6 TRPV1 TRPV3 ASPA |
nsv1065489 | Chr.17:2631416 - 3948349 on Build GRCh38 | Gain | P2RX5 CTNS GSG2 SPATA22 CAMKK1 P2RX5-TAX1BP3 OR1D4 OR3A2 CCDC92B SHPK PAFAH1B1 LOC105371591 EMC6 TRPV3 CLUH OR1E2 ASPA OR1G1 MIR1253 OR3A4P OR3A1 LOC105371592 RAP1GAP2 MIR6776 TRPV1 OR1A2 LOC101927911 NCBP3 OR1D2 OR1D5 OR3A3 P2RX1 ITGAE OR1E1 TAX1BP3 OR1A1 ATP2A3 |
nsv469791 | Chr.17:3700760 - 3885899 on Build GRCh38 | Loss | ITGAE GSG2 CAMKK1 NCBP3 |
nsv1055740 | Chr.17:3381841 - 3890153 on Build GRCh38 | Gain | P2RX5 CTNS GSG2 SPATA22 CAMKK1 NCBP3 P2RX5-TAX1BP3 OR3A2 SHPK EMC6 TRPV3 OR1E2 ASPA OR3A3 ITGAE OR1E1 TAX1BP3 TRPV1 |
nsv833342 | Chr.17:3626188 - 3806082 on Build GRCh38 | Loss | ITGAE P2RX5 CTNS GSG2 TAX1BP3 P2RX5-TAX1BP3 SHPK EMC6 |
More Information
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |