Assay Details
Target Gene Details
Entrez Gene ID: | 338707 |
Gene Name: | beta-1,4-N-acetyl-galactosaminyltransferase 4 |
Gene Aliases: |
- |
Location: |
Chr.11:369773-382117 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 2 - Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
B4GALNT4 | NM_178537.4 | NP_848632.2 | ||
XM_017017654.1 | XP_016873143.1 | |||
AB089939.1 | BAD06471.1 | |||
BC131528.1 | ||||
BF058197.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv527327 | Chr.11:295343 - 620599 on Build GRCh38 | Loss | RASSF7 LOC101059906 IFITM3 LRRC56 CDHR5 LOC143666 PGGHG IFITM2 IFITM1 RNH1 PHRF1 B4GALNT4 LMNTD2 PKP3 SIGIRR ANO9 IFITM5 HRAS IRF7 MIR210HG PTDSS2 MIR210 |
nsv552776 | Chr.11:366710 - 432436 on Build GRCh38 | Loss | PKP3 SIGIRR ANO9 B4GALNT4 |
esv28392 | Chr.11:363975 - 403432 on Build GRCh38 | Gain+Loss | PKP3 B4GALNT4 |
nsv951268 | Chr.11:368601 - 503700 on Build GRCh38 | Deletion | PKP3 SIGIRR ANO9 RNH1 B4GALNT4 PTDSS2 |
nsv552770 | Chr.11:356090 - 444628 on Build GRCh38 | Gain | PKP3 SIGIRR ANO9 B4GALNT4 |
dgv1505n54 | Chr.11:198510 - 470331 on Build GRCh38 | Gain | IFITM3 MIR6743 PGGHG IFITM2 IFITM1 SIRT3 B4GALNT4 PSMD13 ODF3 PKP3 BET1L RIC8A SIGIRR ANO9 NLRP6 IFITM5 PTDSS2 |
nsv825676 | Chr.11:366965 - 372662 on Build GRCh38 | Gain | B4GALNT4 |
nsv1159790 | Chr.11:340219 - 491334 on Build GRCh38 | Deletion | PKP3 SIGIRR ANO9 B4GALNT4 PTDSS2 |
dgv182e199 | Chr.11:349830 - 943372 on Build GRCh38 | Deletion | LOC171391 SNORA52 PNPLA2 RASSF7 LOC101059906 CDHR5 TALDO1 LOC143666 CHID1 SCT RNH1 PHRF1 B4GALNT4 LMNTD2 AP2A2 SIGIRR CD151 IRF7 RPLP2 PANO1 PTDSS2 MIR210 CRACR2B DEAF1 LRRC56 SLC25A22 POLR2L CEND1 EPS8L2 TMEM80 PKP3 DRD4 ANO9 PIDD1 TSPAN4 HRAS MIR210HG PDDC1 |
dgv1507n54 | Chr.11:368778 - 382912 on Build GRCh38 | Loss | B4GALNT4 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |