Assay Details
Target Gene Details
Entrez Gene ID: | 55679 |
Gene Name: | LIM zinc finger domain containing 2 |
Gene Aliases: |
LGMD2W, PINCH-2, PINCH2 |
Location: |
Chr.2:127638421-127681786 on Build GRCh38 |
Assay Gene Location: | Overlaps Exon 11 - Exon 12 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LIMS2 | NM_001136037.2 | NP_001129509.2 | ||
NM_001161403.1 | NP_001154875.1 | |||
NM_001161404.1 | NP_001154876.1 | |||
NM_001256542.1 | NP_001243471.1 | |||
NM_017980.4 | NP_060450.2 | |||
XM_005263710.2 | XP_005263767.1 | |||
XM_006712627.3 | XP_006712690.1 | |||
XM_011511453.1 | XP_011509755.1 | |||
XM_017004469.1 | XP_016859958.1 | |||
AF484961.1 | AAM97589.1 | |||
AF520987.1 | AAM77350.1 | |||
AF527764.1 | AAQ09011.1 | |||
AF527765.1 | AAQ09012.1 | |||
AF527766.1 | AAQ09013.1 | |||
AF527767.1 | AAQ09014.1 | |||
AF527768.1 | AAQ09015.1 | |||
AF527769.1 | AAQ09016.1 | |||
AF527770.1 | AAQ09017.1 | |||
AK000906.1 | BAA91419.1 | |||
AK022470.1 | BAB14047.1 | |||
AK055363.1 | ||||
AK091652.1 | ||||
AK093692.1 | ||||
AK094954.1 | ||||
AK095790.1 | ||||
AK123014.1 | 3 | 2387 | ||
AK297645.1 | ||||
BC065816.1 | AAH65816.1 | |||
BX458594.2 | ||||
DA848179.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv517532 | Chr.2:127630362 - 127647285 on Build GRCh38 | Loss | GPR17 LIMS2 MYO7B |
dgv4069n100 | Chr.2:127537744 - 127722066 on Build GRCh38 | Gain | GPR17 LIMS2 SFT2D3 MYO7B LOC105373609 WDR33 |
esv3893304 | Chr.2:127634972 - 127643416 on Build GRCh38 | Loss | LIMS2 MYO7B |
nsv508864 | Chr.2:127585891 - 127684658 on Build GRCh38 | Insertion | GPR17 LIMS2 MYO7B |
nsv953155 | Chr.2:127617926 - 127665326 on Build GRCh38 | Deletion | GPR17 LIMS2 MYO7B |
nsv518085 | Chr.2:127576838 - 127647285 on Build GRCh38 | Loss | GPR17 LIMS2 MYO7B |
nsv470482 | Chr.2:127593233 - 127707973 on Build GRCh38 | Loss | GPR17 LIMS2 SFT2D3 MYO7B WDR33 |
nsv583037 | Chr.2:127576895 - 127643516 on Build GRCh38 | Loss | LIMS2 MYO7B |
nsv583038 | Chr.2:127641265 - 127718910 on Build GRCh38 | Loss | GPR17 LIMS2 SFT2D3 WDR33 |
More Information
Additional Information:
For this assay, SNP(s) [rs150470565] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |