Assay Details
Target Gene Details
Entrez Gene ID: | 338707 |
Gene Name: | beta-1,4-N-acetyl-galactosaminyltransferase 4 |
Gene Aliases: |
- |
Location: |
Chr.11:369773-382117 on Build GRCh38 |
Assay Gene Location: | Overlaps Exon 14 - Intron 14 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
B4GALNT4 | NM_178537.4 | NP_848632.2 | ||
XM_017017654.1 | XP_016873143.1 | |||
AB089939.1 | BAD06471.1 | |||
BC131528.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv527327 | Chr.11:295343 - 620599 on Build GRCh38 | Loss | PGGHG MIR210HG PTDSS2 RASSF7 IRF7 LOC143666 LMNTD2 MIR210 RNH1 PHRF1 LOC101059906 HRAS IFITM3 IFITM1 IFITM5 B4GALNT4 CDHR5 PKP3 LRRC56 SIGIRR IFITM2 ANO9 |
nsv552776 | Chr.11:366710 - 432436 on Build GRCh38 | Loss | B4GALNT4 PKP3 SIGIRR ANO9 |
nsv1118197 | Chr.11:374500 - 377100 on Build GRCh38 | Deletion | B4GALNT4 |
esv28392 | Chr.11:363975 - 403432 on Build GRCh38 | Gain+Loss | B4GALNT4 PKP3 |
nsv951268 | Chr.11:368601 - 503700 on Build GRCh38 | Deletion | RNH1 PTDSS2 B4GALNT4 PKP3 SIGIRR ANO9 |
nsv552770 | Chr.11:356090 - 444628 on Build GRCh38 | Gain | B4GALNT4 PKP3 SIGIRR ANO9 |
dgv1505n54 | Chr.11:198510 - 470331 on Build GRCh38 | Gain | ODF3 PGGHG RIC8A NLRP6 PTDSS2 SIRT3 MIR6743 IFITM3 IFITM1 PSMD13 IFITM5 B4GALNT4 PKP3 SIGIRR IFITM2 BET1L ANO9 |
nsv1159790 | Chr.11:340219 - 491334 on Build GRCh38 | Deletion | PTDSS2 B4GALNT4 PKP3 SIGIRR ANO9 |
dgv182e199 | Chr.11:349830 - 943372 on Build GRCh38 | Deletion | MIR210HG TMEM80 PTDSS2 TSPAN4 PNPLA2 SNORA52 IRF7 MIR210 RNH1 CD151 PIDD1 PDDC1 B4GALNT4 EPS8L2 PKP3 LRRC56 SIGIRR PANO1 DRD4 ANO9 RPLP2 POLR2L CEND1 SLC25A22 TALDO1 DEAF1 RASSF7 LOC143666 LMNTD2 CRACR2B AP2A2 PHRF1 LOC101059906 HRAS SCT CDHR5 CHID1 LOC171391 |
dgv1507n54 | Chr.11:368778 - 382912 on Build GRCh38 | Loss | B4GALNT4 |
More Information
Additional Information:
For this assay, SNP(s) [rs111622783] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Non-exonic DGV Variation |