Assay Details
Target Gene Details
Entrez Gene ID: | 10021 |
Gene Name: | hyperpolarization activated cyclic nucleotide gated potassium channel 4 |
Gene Aliases: |
SSS2 |
Location: |
Chr.15:73319859-73369264 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
HCN4 | NM_005477.2 | 8 | 3551 | NP_005468.1 |
XM_011521148.2 | 7 | 1394 | XP_011519450.1 | |
AJ132429.1 | 8 | 3123 | CAB42604.1 | |
AJ238850.1 | 8 | 3553 | CAB52754.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv524049 | Chr.15:73320492 - 73387960 on Build GRCh38 | Loss | LOC107984728 HCN4 |
nsv569949 | Chr.15:73320036 - 73387960 on Build GRCh38 | Loss | LOC107984728 HCN4 |
nsv1121512 | Chr.15:72670085 - 75273877 on Build GRCh38 | Deletion | ARID3B LOC102723750 SEMA7A SCAMP5 C15orf59-AS1 UBL7 NEO1 ISLR2 MIR6881 STOML1 UBL7-AS1 CYP1A2 MIR6882 LMAN1L SCAMP2 CCDC33 NPTN-IT1 FAM219B ADPGK EDC3 ULK3 CYP11A1 LOC107984728 CYP1A1 LOC105376731 CSK LOC283731 ISLR MIR4513 COX5A LOXL1-AS1 GOLGA6C CD276 BBS4 C15orf39 HIGD2B C15orf59 REC114 LOC732265 NPTN LOC101929333 RPP25 PML ADPGK-AS1 STRA6 LOXL1 GOLGA6A HCN4 MPI CPLX3 LOC729739 TBC1D21 PPCDC CLK3 |
More Information
Additional Information:
For this assay, SNP(s) [rs117819825] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |