Assay Details
Target Gene Details
Entrez Gene ID: | 1973 |
Gene Name: | eukaryotic translation initiation factor 4A1 |
Gene Aliases: |
DDX2A, EIF-4A, EIF4A, eIF-4A-I, eIF4A-I |
Location: |
Chr.17:7572706-7579006 on Build GRCh38 |
Assay Gene Location: | Overlaps Exon 4 - Intron 4 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
EIF4A1 | NM_001204510.1 | NP_001191439.1 | ||
NM_001416.3 | NP_001407.1 | |||
AK130082.1 | ||||
AK289453.1 | ||||
AK291971.1 | ||||
AK296664.1 | ||||
AK297916.1 | ||||
AK303222.1 | ||||
AK303599.1 | 5 | 537 | ||
AK309274.1 | ||||
AK312630.1 | ||||
BC009585.1 | AAH09585.1 | |||
BC073752.1 | AAH73752.1 | |||
BG284868.1 | ||||
BT019880.1 | AAV38683.1 | |||
BT019881.1 | AAV38684.1 | |||
D13748.1 | BAA02897.1 | |||
U79273.1 | 1 | 541 |
Target Gene Details
Entrez Gene ID: | 100533955 |
Gene Name: | SENP3-EIF4A1 readthrough (NMD candidate) |
Gene Aliases: |
- |
Location: |
Chr.17:7561992-7579006 on Build GRCh38 |
Assay Gene Location: | Overlaps Exon 15 - Intron 15 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3-EIF4A1 | NR_037926.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422288 | Chr.17:6789933 - 7646709 on Build GRCh38 | Deletion | GPS2 SENP3-EIF4A1 TMEM256-PLSCR3 TMEM102 LOC107983988 PLSCR3 SLC16A11 NLGN2 TMEM256 C17orf49 MIR195 ZBTB4 TMEM95 FBXO39 TEKT1 ACADVL SOX15 SENP3 ACAP1 MIR324 ASGR2 LOC100996842 SHBG TNK1 RNASEK-C17orf49 EIF5A SLC35G6 MPDU1 POLR2A ALOX12 CHRNB1 ATP1B2 ELP5 RNASEK FXR2 CD68 ALOX12-AS1 BCL6B EIF4A1 FGF11 SPEM1 MIR497 TNFSF12-TNFSF13 C17orf74 DVL2 MIR497HG SLC16A13 CLEC10A CLDN7 SNORD10 NEURL4 SLC2A4 YBX2 GABARAP SNORA67 TNFSF13 PHF23 SAT2 CTDNEP1 KCTD11 ASGR1 TNFSF12 DLG4 SNORA48 ALOX12P2 |
nsv574322 | Chr.17:7010333 - 7689462 on Build GRCh38 | Loss | GPS2 SENP3-EIF4A1 TMEM256-PLSCR3 TMEM102 LOC107983988 PLSCR3 SLC16A11 NLGN2 TMEM256 C17orf49 MIR195 WRAP53 ZBTB4 TMEM95 ACADVL SOX15 SENP3 ACAP1 MIR324 ASGR2 LOC100996842 SHBG TNK1 TP53 RNASEK-C17orf49 EIF5A SLC35G6 MPDU1 POLR2A ALOX12 CHRNB1 ATP1B2 ELP5 RNASEK FXR2 CD68 ALOX12-AS1 BCL6B EIF4A1 FGF11 SPEM1 MIR497 TNFSF12-TNFSF13 C17orf74 DVL2 MIR497HG SLC16A13 CLEC10A CLDN7 SNORD10 NEURL4 SLC2A4 YBX2 GABARAP SNORA67 TNFSF13 PHF23 SAT2 CTDNEP1 KCTD11 ASGR1 TNFSF12 DLG4 SNORA48 |
nsv960400 | Chr.17:7574339 - 7575434 on Build GRCh38 | Duplication | SENP3-EIF4A1 SNORA48 EIF4A1 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |