Assay Details
Target Gene Details
Entrez Gene ID: | 338707 |
Gene Name: | beta-1,4-N-acetyl-galactosaminyltransferase 4 |
Gene Aliases: |
- |
Location: |
Chr.11:369773-382117 on Build GRCh38 |
Assay Gene Location: | Overlaps Exon 8 - Intron 8 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
B4GALNT4 | NM_178537.4 | NP_848632.2 | ||
XM_017017654.1 | XP_016873143.1 | |||
AB089939.1 | BAD06471.1 | |||
BC131528.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv527327 | Chr.11:295343 - 620599 on Build GRCh38 | Loss | PGGHG LMNTD2 LOC101059906 LOC143666 IFITM1 IFITM2 HRAS IRF7 RASSF7 MIR210 IFITM5 IFITM3 PTDSS2 PHRF1 RNH1 ANO9 LRRC56 B4GALNT4 MIR210HG SIGIRR CDHR5 PKP3 |
nsv552776 | Chr.11:366710 - 432436 on Build GRCh38 | Loss | ANO9 B4GALNT4 SIGIRR PKP3 |
esv28392 | Chr.11:363975 - 403432 on Build GRCh38 | Gain+Loss | B4GALNT4 PKP3 |
nsv951268 | Chr.11:368601 - 503700 on Build GRCh38 | Deletion | RNH1 ANO9 B4GALNT4 SIGIRR PKP3 PTDSS2 |
nsv552770 | Chr.11:356090 - 444628 on Build GRCh38 | Gain | ANO9 B4GALNT4 SIGIRR PKP3 |
dgv1505n54 | Chr.11:198510 - 470331 on Build GRCh38 | Gain | PGGHG RIC8A NLRP6 IFITM1 SIRT3 IFITM2 PSMD13 IFITM5 IFITM3 PTDSS2 ANO9 MIR6743 B4GALNT4 BET1L ODF3 SIGIRR PKP3 |
nsv1159790 | Chr.11:340219 - 491334 on Build GRCh38 | Deletion | ANO9 B4GALNT4 SIGIRR PKP3 PTDSS2 |
dgv182e199 | Chr.11:349830 - 943372 on Build GRCh38 | Deletion | LMNTD2 PNPLA2 LOC101059906 EPS8L2 TMEM80 HRAS TSPAN4 RASSF7 POLR2L PTDSS2 SNORA52 PHRF1 RPLP2 PDDC1 CEND1 B4GALNT4 DRD4 LOC171391 SIGIRR CDHR5 PKP3 DEAF1 LOC143666 CHID1 IRF7 PIDD1 PANO1 MIR210 RNH1 ANO9 AP2A2 SLC25A22 CD151 LRRC56 CRACR2B TALDO1 SCT MIR210HG |
dgv1507n54 | Chr.11:368778 - 382912 on Build GRCh38 | Loss | B4GALNT4 |
More Information
Additional Information:
For this assay, SNP(s) [rs73400533] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Non-exonic DGV Variation |