Assay Details
Target Gene Details
Entrez Gene ID: | 57611 |
Gene Name: | immunoglobulin superfamily containing leucine rich repeat 2 |
Gene Aliases: |
LINX |
Location: |
Chr.15:74128203-74141826 on Build GRCh38 |
Assay Gene Location: | Within Exon 6 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
ISLR2 | NM_001130136.1 | 4 | 3191 | NP_001123608.1 |
NM_001130137.1 | 4 | 2927 | NP_001123609.1 | |
NM_001130138.1 | 4 | 2635 | NP_001123610.1 | |
NM_020851.2 | 3 | 2760 | NP_065902.1 | |
XM_011521840.2 | 4 | 3030 | XP_011520142.1 | |
XM_011521841.1 | 4 | 2713 | XP_011520143.1 | |
XM_017022446.1 | XP_016877935.1 | |||
AB040898.2 | 4 | 3191 | ||
AK092297.1 | 3 | 2586 | ||
AK092302.1 | 4 | 3207 | ||
AK096602.1 | 2 | 2538 | ||
AK290467.1 | ||||
AY358316.1 | 3 | 2558 | AAQ88682.1 | |
BC114551.1 | 3 | 1274 | AAI14552.1 | |
BC152429.1 | 4 | 3191 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv833053 | Chr.15:74067815 - 74262799 on Build GRCh38 | Loss | CCDC33 GOLGA6A ISLR LOC283731 LOC732265 ISLR2 STRA6 |
nsv1050884 | Chr.15:74102642 - 74197072 on Build GRCh38 | Gain | ISLR LOC283731 ISLR2 STRA6 |
nsv469619 | Chr.15:73999518 - 74173980 on Build GRCh38 | Loss | PML GOLGA6A ISLR LOC283731 LOC732265 ISLR2 |
nsv827385 | Chr.15:74127198 - 74136960 on Build GRCh38 | Gain | LOC283731 ISLR2 |
nsv951993 | Chr.15:74124460 - 74137359 on Build GRCh38 | Deletion | LOC283731 ISLR2 |
esv2760040 | Chr.15:73922773 - 74172575 on Build GRCh38 | Gain+Loss | LOXL1-AS1 STOML1 PML GOLGA6A LOC283731 LOXL1 LOC732265 ISLR2 |
nsv1047564 | Chr.15:74116495 - 74165840 on Build GRCh38 | Gain | LOC283731 ISLR2 |
nsv1121512 | Chr.15:72670085 - 75273877 on Build GRCh38 | Deletion | COX5A EDC3 CYP1A2 RPP25 LOC102723750 ISLR2 HIGD2B C15orf39 CPLX3 LOXL1-AS1 PML CCDC33 ISLR LOC283731 CSK PPCDC ADPGK LMAN1L BBS4 NPTN C15orf59-AS1 SCAMP2 ARID3B UBL7 SEMA7A CYP11A1 MIR6881 UBL7-AS1 LOC101929333 C15orf59 SCAMP5 MPI MIR6882 GOLGA6A LOXL1 TBC1D21 MIR4513 CD276 CYP1A1 CLK3 HCN4 FAM219B ADPGK-AS1 NPTN-IT1 ULK3 LOC107984728 LOC105376731 NEO1 STRA6 STOML1 LOC729739 GOLGA6C REC114 LOC732265 |
More Information
Additional Information:
For this assay, SNP(s) [rs114366458] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |